fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G21650 RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1)

>AT2G21650.1 genomic map

>>Show CDS map




Uncut enzymes: Acc65I, AclI, AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BssHII, BssSI, BstEII, BstXI, Bsu36I, BtrI, Cfr10I, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PleI, PmeI, PpuMI, PshAI, PspOMI, PvuI, PvuII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, SwaI, TliI, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 3693
AccI GT|[AC][TG]AC 760, 2532, 5648
AccII(FnuDII) CG|CG 3557
AccIII(BspMII) T|CCGGA 4169
AciI C|CGC 103, 2264, 3018, 3556
AflII C|TTAAG 723
AflIII A|CPuPyGT 2411, 5658
AluI AG|CT 560, 1082, 1092, 1488, 1630, 1841, 2008, 2510, 3285, 3332, 3405, 3569, 3674, 3867, 4194, 4221, 4506, 4625, 4824
ApoI Pu|AATTPy 329, 469, 728, 820, 1856, 2017, 2150, 3358, 3847, 3890, 5010, 5186, 5455, 5490, 5510, 5628, 6154, 6385, 6428, 6530
AseI AT|TAAT 171, 2725, 2981, 3435, 4689, 6043
AvaII G|G[AT]CC 101, 1443, 2605, 2822, 3171, 4171, 5116, 5886, 6125
AvrII C|CTAGG 2078
BclI T|GATCA 1869
BfaI C|TAG 1094, 1486, 1706, 1744, 2077, 2142, 2324, 3287, 3682, 3759, 3865, 4017, 4144, 4190, 4243, 4648, 6300, 6380
BglII A|GATCT 967, 1294
BsaAI PyAC|GTPu 64, 2412, 3565, 4278, 4860, 5584
BsaBI GATNN|NNATC 1266, 1293, 3832, 5446
BsaHI GPu|CGPyC 3693
BsaJI C|CNNGG 98, 660, 2078, 2200, 2619, 2935, 3184
BsaWI [AT]|CCGG[AT] 4169
BsiHKAI G[AT]GC[AT]|C 3562, 3577, 4141
BslI CCNNNNN|NNGG 1342, 1480, 2651, 2935, 3708, 5577, 5900, 5939
Bsp1286I G[GAT]GC[CAT]|C 2129, 2195, 3562, 3577, 4141
BspDI AT|CGAT 551, 4693, 5468
BspEI T|CCGGA 4169
BspHI T|CATGA 4753
BsrDI GCAATGNN| 1867
BsrGI T|GTACA 308, 6236
BsrI ACTGGN| 3926
BssKI |CCNGG 1446, 1503, 1849, 1881, 2935
BstAPI GCANNNN|NTGC 3773, 5247
BstBI TT|CGAA 1617, 5317
BstF5I GGATGNN| 747, 3787, 4812
BstNI CC|[AT]GG 1446, 1503, 1881, 2935
BstUI CG|CG 3557
BstYI Pu|GATCPy 967, 1294, 2486, 3820, 5761
BstZ17I GTA|TAC 760, 5648
BtgI C|CPuPyGG 98, 660, 2619
BtsI GCAGTGNN| 1180, 4832
Cac8I GCN|NGC 3560, 4139, 4327
ClaI AT|CGAT 551, 4693, 5468
DdeI C|TNAG 208, 567, 963, 1013, 1337, 1361, 1727, 1860, 2296, 2433, 2798, 3461, 3999, 4224, 4588, 4713, 4962, 5813
DpnI GA-CH3|TC 184, 633, 679, 966, 1266, 1293, 1566, 1868, 2485, 2719, 3273, 3819, 3832, 4865, 5208, 5440, 5760, 5924
DpnII |GATC 184, 633, 679, 966, 1266, 1293, 1566, 1868, 2485, 2719, 3273, 3819, 3832, 4865, 5208, 5440, 5760, 5924
DraI TTT|AAA 472, 2234, 2520, 2670, 2770, 5343, 5723, 6337, 6424, 6527
EaeI Py|GGCCPu 6506
EcoRI G|AATTC 3358, 6385
EcoRV GAT|ATC 1888, 3912
Fnu4HI GC|NGC 1422, 2264, 4330, 4826
HaeIII GG|CC 2202, 3927, 6505
HhaI GCG|C 6095
HinP1I G|CGC 6095
HincII GTPy|PuAC 795, 898, 2683, 3213, 5016
HindIII A|AGCTT 3675, 4507
HinfI G|ANTC 407, 609, 655, 665, 710, 834, 1348, 1379, 1499, 1548, 1716, 1831, 2220, 2578, 2630, 2939, 3112, 3319, 3967, 4003, 4525, 4658, 4695, 4884, 4923, 5132, 5154, 5252, 5283, 5368, 5385, 5917
HpaI GTT|AAC 795, 898, 5016
HpaII C|CGG 1848, 4168
Hpy188I TCN|GA 689, 1033, 1247, 1382, 1545, 1719, 1891, 2488, 2644, 2797, 3485, 3580, 4000, 4609, 4892, 4917, 5151, 5255, 5438, 5561, 5922, 5971
HpyCH4III ACN|GT 1127, 1227, 1412, 1776, 3147, 3596, 3655, 4112, 4173, 4231, 5373, 5614, 5644, 5674, 5706, 6113
HpyCH4IV A|CGT 63, 762, 2411, 3215, 3564, 3692, 4277, 4859, 5583, 5807
HpyCH4V TG|CA 38, 554, 1687, 1919, 2164, 2742, 2831, 2876, 3035, 3982, 4360, 4805, 4827, 4940, 5239, 5430, 5586, 5961, 6454
MboI |GATC 184, 633, 679, 966, 1266, 1293, 1566, 1868, 2485, 2719, 3273, 3819, 3832, 4865, 5208, 5440, 5760, 5924
MfeI C|AATTG 316, 483
MseI T|TAA 9, 32, 112, 170, 245, 340, 356, 471, 501, 529, 533, 540, 722, 754, 794, 799, 858, 897, 1205, 1262, 1275, 1289, 1794, 2036, 2215, 2233, 2340, 2388, 2504, 2519, 2669, 2724, 2769, 2959, 2980, 3092, 3100, 3352, 3434, 3608, 3677, 3885, 3918, 4115, 4688, 4776, 4785, 5015, 5070, 5093, 5199, 5212, 5289, 5342, 5542, 5591, 5722, 5783, 5789, 5860, 6000, 6042, 6087, 6177, 6288, 6322, 6336, 6403, 6423, 6498, 6511, 6526
MslI CAPyNN|NNPuTG 873, 4752, 5663, 6188
MspI C|CGG 1848, 4168
MwoI GCNNNNN|NNGC 568, 1431, 3773, 4323, 5247
N.BstNBI GAGTCNNNN|N 670, 839
NciI CC|[CG]GG 1849
NcoI C|CATGG 98, 660, 2619
NdeI CA|TATG 787, 3772
NlaIII CATG| 97, 659, 706, 873, 1341, 2287, 2618, 2744, 2833, 2969, 3309, 3602, 4106, 4465, 4487, 4752, 4819, 4950, 5657, 5894, 5933, 6011
NlaIV GGN|NCC 1763, 3015, 3172
NsiI ATGCA|T 2832
NspI PuCATG|Py 2834, 4488, 5658
PacI TTAAT|TAA 533
PciI A|CATGT 5658
PflMI CCANNNN|NTGG 3708
PmlI CAC|GTG 3565, 4278, 5584
PsiI TTA|TAA 3736, 3954, 4554, 6347
PspGI |CC[AT]GG 1446, 1503, 1881, 2935
PstI CTGCA|G 4828
RsaI GT|AC 307, 813, 3264, 3612, 6235
RsrII CG|G[AT]CCG 4172
Sau3AI |GATC 184, 633, 679, 966, 1266, 1293, 1566, 1868, 2485, 2719, 3273, 3819, 3832, 4865, 5208, 5440, 5760, 5924
Sau96I G|GNCC 101, 1443, 2605, 2822, 3171, 3928, 4171, 5116, 5886, 6125
ScaI AGT|ACT 814
ScrFI CC|NGG 1446, 1503, 1849, 1881, 2935
SfcI C|TPuPyAG 1634, 3871, 4306, 4442, 4828, 6520
SmlI C|TPyPuAG 190, 297, 369, 723, 1875, 1905, 1990, 2662, 3324, 5349
SnaBI TAC|GTA 64, 4860
SspI AAT|ATT 4686, 5204, 5339, 6333
StuI AGG|CCT 2203
StyI C|C[AT][AT]GG 98, 660, 2078, 2200, 2619, 3184
Taqƒ¿I T|CGA 550, 1605, 1616, 1975, 2248, 3255, 4256, 4265, 4692, 4760, 4980, 5006, 5271, 5316, 5420, 5467
TfiI G|A[AT]TC 407, 609, 1348, 1379, 1499, 1548, 1716, 1831, 2220, 2578, 2630, 2939, 3112, 3319, 4003, 4525, 4658, 4695, 4884, 4923, 5132, 5154, 5252, 5283, 5368, 5385, 5917
TseI G|C[AT]GC 1422, 4330, 4826
Tsp45I |GT[CG]AC 2107, 4251, 4275, 5397, 5581
Tsp509I |AATT 168, 258, 275, 315, 328, 376, 468, 482, 499, 514, 531, 616, 727, 819, 856, 941, 1270, 1553, 1780, 1792, 1855, 2016, 2149, 2386, 2894, 2957, 3061, 3098, 3294, 3357, 3432, 3550, 3606, 3706, 3846, 3889, 4378, 4943, 5009, 5072, 5085, 5104, 5185, 5197, 5287, 5320, 5328, 5360, 5433, 5454, 5481, 5489, 5509, 5515, 5540, 5546, 5589, 5597, 5627, 5905, 5944, 5951, 6040, 6153, 6199, 6290, 6320, 6384, 6398, 6405, 6427, 6500, 6529
TspRI NNCA[CG]TGNN| 1180, 3461, 4592, 4832, 5374
XbaI T|CTAGA 3683, 6301, 6381
XcmI CCANNNNN|NNNNTGG 2819, 2935
XmnI GAANN|NNTTC 2053, 2758, 4889, 5333, 5917


Click here to view TAIR data

>AT2G21650 genomic sequence (4071-4351,4812-4836,) length:6573
accattgcgt ttaatcatct atactaatat catttaatat gcaagtcttt 
50
atcattccct acttacgtat tattattact ttgctatgaa aatatgacca 
100
tggaccgcca aacttaaata aagttactga ttttttttgt gggtttggct 
150
tgaaactccg ttggactgaa attaataaaa aaaatgatcc ttgaggaaag 
200
aaatatatct tagtttcaat gttatagtgc tgtgtttgtg aaacgattaa 
250
ccttctgtga attatttttt tgataaaatt atagatttac ttgtccctca 
300
agaagaatgt acatacaatt gttgtcataa atttttcccc cttaaaacat 
350
actattttta acttgtccct caagaataat tcttctttag tctaaaggtg 
400
tgttattgaa tcatagatat ttgttcattc tttttgccca aaaagaaaag 
450
gatatttgtt cattctctaa atttaaaatc tacaattgaa taaagaaaca 
500
aattaacaaa aagacaatta ccaatctctg ttaattaagt tttaacataa 
550
atcgatgcaa tagctttcta agcaaacaaa aaaaaaaaaa aaaaaaaaaa 
600
gataaagacg attcaaaaat tacactttac gaaggatcaa acataagaga 
650
aatatgactc catgggagtc tatcatttat gatcctcact cggaagacgg 
700
actatggcat gactcttcct cccttaagaa tttaccacat tatgtggatg 
750
taaagttaag tatacgttta catagttgat tatatccata tgttgttaac 
800
ttaaacattg acaagtacta aatttttaca tatagagtca tctatgtttc 
850
ctaatgtaat taactttaca tccacatgat tgttatattc ccaaatagtt 
900
aactacttat acacatagtt acttcacttc ctctgttttc ctaattttca 
950
ttttcaacca caacttagat cttattgtaa tgagttatct tgtttagtaa 
1000
cagccagaca caactcagga gtatcaaaaa caatcagaag tggtgtaaaa 
1050
cagaaccaaa ataaacaatc tttttagaga acaagctatt atgagctagt 
1100
tgaacaacaa catacttatt ccagaaaaca gttttatgta ttggattgct 
1150
acaaatgtta gacaaaaatc aacaaaagca gtggcagttt actgataaaa 
1200
tcactcttaa aaaaaagaac aaaaacaaca gttctatggt aacaatgtca 
1250
gatgagaaga agattaagat caattcttaa aagaaaatga ttaagatctt 
1300
tttccttata tattctctca tcaaccaata aaaacccctg agcatggaga 
1350
ttctccattt cctaagttct ttattcaaag attccgagaa acaagaaaat 
1400
aaaaagaact ctactgttat aggctgctac tatggctgat tttggaccag 
1450
gcttgtgtct gtggatactt ttttccctca aatgggacta gctcttatgg 
1500
attcctggtg ataatatgcc atttccttct tttgcgtaaa gtttgtccga 
1550
atccaatttt gtaaagggat cattcttttg ttgataataa tatctcacca 
1600
ctatcctcga aaatccttcg aaaacatttt gagctacaga aacttccatt 
1650
atagagtgat tacttcaggt tcgggttctt ttccaagttg caaaaggaga 
1700
gcaaccacta ggagaggaat cagaatactt agtttttgtt tcttgctaga 
1750
tttggggata agggttccaa atatcaacag taattttgta acaaattaaa 
1800
atgcttactc ttttaccttc cttttcatac agattccttg taagctactc 
1850
cgggtaaatt ctcagcaatg atcactcaag acctggagat atcagaataa 
1900
aaccctcaag cgtttactga tgcaactatt catagtgaga aagtaaaaat 
1950
aaccatcttg ctcaacaaca aaataatcga ccttatgaac tcaagattat 
2000
cgttttcaca gctaaagaat ttacctaaac ttatgactta aatgtgggga 
2050
aagtgttcct tttttaccat ttcaatacct aggcaaagaa ggtcgctgtg 
2100
aagcatcgtg acgatgagaa tatcagtagt gccccaatgc ctactagcag 
2150
aatttcttgg caacttgcaa tctattatct ctctggaata tattgtgccc 
2200
caaggcctca ttattgttaa gattctttct ctgtttaaag ttttccttct 
2250
cgataagaag tttcgccgcc cctaccctga aaccaaacca tgacatctta 
2300
gaaacagaac catccattat cataactaga ataaaaatat cttaataata 
2350
taagtgctta tattggcata tatccagaaa gagagcaaat taaagtatca 
2400
taagacctat acacgtaaag gaatatcatc ttacttagca aaactaataa 
2450
catttagtga aatggataaa cactattatc aagaaagatc cgagaagtat 
2500
ggttcttaaa tagctttact ttaaaaagtg tgtagacaat aactttatat 
2550
agtcttgtgg tcttttgata acaaacctga ttcaatagtg ataagatatg 
2600
agtatggtcc tccatctccc atgggacttt gaatcacctg tgtttccgag 
2650
agagggaaaa tcttgagact ttaaatcaaa atgtcaactt tattatgaac 
2700
taaaaatcaa acaacaagtg gatcattaat gaacaacctt tgttgcatga 
2750
aaagaaaatc ttcaaatctt ttaaagaatg aaacaaaatg ctcactttct 
2800
gagataaaac caaacaacaa gtggaccatt tatgcatgtt gtctttttgc 
2850
caagtatgta tattattagt cctattgtgc attatttagc aacctaattt 
2900
agttatatga caataatcta tttgcccatc ccaaccctgg attcttacca 
2950
aacaaggtaa ttaaagtgtt catgtgaaac attaatgttt gtattttgta 
3000
atacgacaac ttttggttcc cgcccatatt caataatgca gacactaaag 
3050
aacagaagaa acaatttgaa tatccaccaa gaaaagtgat tatttaacaa 
3100
attaacaacc aagaatctac attagacaat atatgaccaa gaaaaacaca 
3150
gttgcctaac ttcaaggaga tggacccaac aagccaagga aaaaaaaagg 
3200
taggtaaaca atgttgacgt ttattttttt caacaacaag aaaacacaga 
3250
aaaatgtcga tgattgtacg gaaagatcat caatacagct agataaattg 
3300
atatggtttt catggcagag aatctcaagg taaagctctg cccccacttt 
3350
tctttaagaa ttcttcttat acaagagaat atatgactta tggtgaacac 
3400
acgaaaagct ccaactttgt gtttgtggat acaaattaat cctcacaatg 
3450
tttcaaaatc actgagattt ttgataagaa ggaaatctga ttagtcaatg 
3500
aaaatcatct gtcaatagag acttgtccct aactttcaac caaagacttg 
3550
taattttccg cgagcacgtg agctttgtgc tctgattaga gaccagactg 
3600
ttccatgaat taagtaccat aggtagagag attttcctaa ctatttatta 
3650
cctaaactgt ttctttttga caagaagctt aatctagaga atgacgtcat 
3700
aaccactaat tgggaaagaa aagtaaacat attagttata acatttatag 
3750
aaaagtgtgt ctagggagca tcatatgcca aatatggatg gaaaaacgca 
3800
atctttggtt gattagtttg gatctttgat actgatctcc acaaaaaaat 
3850
ttgctcatat tcttttctag ctatagagac aaagacttaa aattctcttt 
3900
gttttggcaa agatatcttt taacaactgg ccctacccca caccaaaacc 
3950
tctttataaa gagcaaggac tctgcgacat ctgtgcaaca tatcatttcc 
4000
tcagaatctc tttcttttct aggtttatta ctacacaaaa ccaaacatca 
4050
tcaactttag ttactaaaca ATGGCATCAG GCTCAATGTC TTCTTATGGC 
4100
TCTGGCTCAT GGACTGTTAA GCAGAACAAA GCCTTTGAGC GTGCTCTAGC 
4150
AGTCTATGAC CAAGACACTC CGGACCGTTG GCACAATGTT GCTAGAGCTG 
4200
TTGGTGGTAA AACACCAGAA GAAGCTAAGA GACAGTATGA CCTTCTAGTT 
4250
CGTGACATCG AAAGCATCGA GAATGGTCAC GTGCCATTCC CTGACTACAA 
4300
GACTACTACA GGAAACAGCA ACAGAGGCAG GCTGCGTGAT GAGGAAAAGA 
4350
Ggtatatttg ttgcaatcta ataagacaca atttatgcta ataacaagta 
4400
atcaactttg tttatccata atagcccact ataagatact tctatagaca 
4450
agttctattc caataccatg acaagaaaac ataaagggca tgtctgtttc 
4500
agcataaagc ttgttacttt acagagattc tcttgacttt ctatcatatt 
4550
gagttataag aggctctaaa tcagccaagt gttctcttct cagtgttctt 
4600
caggctttat cagaaccaaa actaaaagct cccacaacaa aaaatatgcc 
4650
tagaaataga atcattcctt gtcaatatgg tatctaatat taatcgattc 
4700
ccaaatcttt cccctaagaa acttccagaa acaaaaataa acccactcat 
4750
catcatgaaa ctcgaaccaa caacatttta acctgtttaa catttttttt 
4800
ttttattgca gGATGAGAAG CATGAAGCTG CAGTGAgaca agaagcaaca 
4850
aaacctaact acgtatgatc gtcaaaataa aagagaatca cttcagagag 
4900
atgtgttttt ttcaatgtct gacgaatcaa tgtttttttc ttgcaatttc 
4950
tcatgttttt ccctaagaaa tggttttttt ttcgaggcaa caaaaaaaaa 
5000
ataacactcg aatttgttaa ccaaaatctg tatttagggt tcttcgtaat 
5050
gaaaaatcca atgtctaaat gttaattata tattacaatt atgcttaaaa 
5100
cgagtaattc gttcacggac cttgaaatca acgaatcaat ctctcaacca 
5150
atctgaatca atgttgcttc aaaatggaaa aatccaaatt cataaatcaa 
5200
ttaaatattg atcttaacta tatattggag catccaataa tgcaaagtat 
5250
gcgaatcgga caagaagaag tctcgaaatc aacgaatcaa ttaaccaatc 
5300
tctattttta gggttcttcg aaattgggga attgtttcaa tatttaaact 
5350
caagtgttga taattggtga atcactgttt atggagaatc taacaatgtc 
5400
acgggacgag aagaactcac ctcgaaaaat ctgcaatttc tgatcgcaat 
5450
cttcaaattc cagcgaaatc gatgagagtt tcaatttggg aatttcatag 
5500
ataaacccca aatttcaatt ttttttattt tctgggtaga taattaaaat 
5550
tgggcgggaa atctgatgct tccaaaaata ggtcacgtgc aattaactaa 
5600
ttatacacac atataccgtg cggatacgaa tttgtgtcct tcttacagta 
5650
tacgaataca tgtatatgtc tctcaccgta ttcttctttt ttttttttgg 
5700
taaaatacag tattttattt tctttaaaag tatgtaataa tgggcaaaaa 
5750
actttgtttt ggatcttttc tcaaacatag cacattaagt ttaagatgat 
5800
tgaataatac gttctaagtt tctaactatt gttccaaata tgtaactaaa 
5850
caacttcctc tttaatatat caaccaagac gagagaggtc caaaccatgt 
5900
tcggggaatt gagaagtgat tctctgatcc aaaccatgtt cggggaattg 
5950
ggaattgagc gttgcagtat ttctgaaaga aaaaaaaaaa agtgaggctt 
6000
tttaagtagt ctcatgctta tcttttgtta gatatttctc taattaatgt 
6050
tccaaagatg ttagtgaggc atttccgtta tctattcttt aactatgcgc 
6100
ccagagtaga tgaactgtaa gtgttggacc aagtaaagtc taaacgatgt 
6150
tcaaaatttg atgtatgtga tggagttgtt aaacacaaat atgtaaaccc 
6200
aattcaccaa aacttgttag tcttgaaaat agttttgtac accaaaactt 
6250
gtttgtcaaa aaaacagata catactcctt tgttcatttt taattgattt 
6300
tctagataaa aacacacaga taattaaaaa aaaatattta aactgattat 
6350
aaatgtagta acttttgtga gttacatttt tctagaattc taaaccaata 
6400
atttttaatt atttgtcttg aagtttaaaa ttcatcaata ataactaata 
6450
aatagtgcat agaaaacggg aaaaaaaccg aaaaaatctc catttatttt 
6500
taatttggcc gtttaatacc tatagtttta aatttggaat ataaatacct 
6550
tatttatttt ttattgtctc tta
6600