fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G21920 F-box associated ubiquitination effector family protein (.1)

>AT2G21920.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 763
HindIII A|AGCTT 103, 191
NcoI C|CATGG 537
StyI C|C[AT][AT]GG 340, 537
XbaI T|CTAGA 156


Click here to view TAIR data

>AT2G21920.1 length:837
ATGAGTTTTG ATGTCCGATC AGAAAAAATT GATCTAATAA AAGGACCAGA 
50
GTTACCAGAC TACAACATGT TCATGAGTCA AAAGTTTACA AGCTACGAAG 
100
GAAAGCTTGC AATCCTGCTC ACTGGTAATG GTGATTGTTC ATTTTATATG 
150
TGGATTCTAG AGGATGCTGC GAAACATGAA TGGTCGAAGA AAGCTTATGT 
200
TGTGCCTGAC TTTTTTCCTC TCGACCCTTT TGTGCTACTC ATGCAGAGAG 
250
CAAATGAGAA TGACATTGTA AGAACATTTC ACTACGACGA TAGAGTCGGA 
300
ACCAGCGACG CAATCGTGGA ATCAACACCG GCGTCTCCAC CTAGGCATAT 
350
TATGTTCTCC GTTATAATCC GAAAAGATAG TCCGCTCCGA AATCTCCGCG 
400
GAGCTAAGTC TATCTTCAAA GTCTCCTTTA CTATCATTCT GAAAACGTTT 
450
ATAGTTAAGT TAATTATGAT GAAAGATTTC CAACTAGATG GTGATATGAT 
500
CATATCGAAA ACGCTATCAC GTACTGATGT TGACCACCAT GGACGTCTGT 
550
TTTTACCCAA AAACCAAGTG CTCTCGGTCT TGAAAAAGAT GAGAAATGTT 
600
ACAAAAGAGA GCTTGCGAAA GGGTATTGAA CTCGAAGTTG TAGACATCAT 
650
TGAAAACGAT TCATACTCTG TTATCCTAAA GTCCAGGAAC ACCACCAACG 
700
ATTTTGTTCT GGCATCGGGT TGGAGCATTA TGAAGCATTC ATTAGACCTC 
750
CAAGAAGGTG ATGATATCAA ACTATTTTGG GATTACTTGA ATTACAAATT 
800
CATTATTCTC AATTTCGAAT ACAACTTAAT TCCCTAA
850

>AT2G21920.1 longest ORF length:278
MSFDVRSEKI DLIKGPELPD YNMFMSQKFT SYEGKLAILL TGNGDCSFYM 
50
WILEDAAKHE WSKKAYVVPD FFPLDPFVLL MQRANENDIV RTFHYDDRVG 
100
TSDAIVESTP ASPPRHIMFS VIIRKDSPLR NLRGAKSIFK VSFTIILKTF 
150
IVKLIMMKDF QLDGDMIISK TLSRTDVDHH GRLFLPKNQV LSVLKKMRNV 
200
TKESLRKGIE LEVVDIIEND SYSVILKSRN TTNDFVLASG WSIMKHSLDL 
250
QEGDDIKLFW DYLNYKFIIL NFEYNLIP
300