Locus |
Common name |
Short description |
AT2G21920 |
|
F-box associated ubiquitination effector family protein (.1) |
>AT2G21920.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
763 |
HindIII
| A|AGCTT |
103, 191 |
NcoI
| C|CATGG |
537 |
StyI
| C|C[AT][AT]GG |
340, 537 |
XbaI
| T|CTAGA |
156 |
Click here to view TAIR data
>AT2G21920.1 length:837
ATGAGTTTTG ATGTCCGATC AGAAAAAATT GATCTAATAA AAGGACCAGA | 50 |
GTTACCAGAC TACAACATGT TCATGAGTCA AAAGTTTACA AGCTACGAAG | 100 |
GAAAGCTTGC AATCCTGCTC ACTGGTAATG GTGATTGTTC ATTTTATATG | 150 |
TGGATTCTAG AGGATGCTGC GAAACATGAA TGGTCGAAGA AAGCTTATGT | 200 |
TGTGCCTGAC TTTTTTCCTC TCGACCCTTT TGTGCTACTC ATGCAGAGAG | 250 |
CAAATGAGAA TGACATTGTA AGAACATTTC ACTACGACGA TAGAGTCGGA | 300 |
ACCAGCGACG CAATCGTGGA ATCAACACCG GCGTCTCCAC CTAGGCATAT | 350 |
TATGTTCTCC GTTATAATCC GAAAAGATAG TCCGCTCCGA AATCTCCGCG | 400 |
GAGCTAAGTC TATCTTCAAA GTCTCCTTTA CTATCATTCT GAAAACGTTT | 450 |
ATAGTTAAGT TAATTATGAT GAAAGATTTC CAACTAGATG GTGATATGAT | 500 |
CATATCGAAA ACGCTATCAC GTACTGATGT TGACCACCAT GGACGTCTGT | 550 |
TTTTACCCAA AAACCAAGTG CTCTCGGTCT TGAAAAAGAT GAGAAATGTT | 600 |
ACAAAAGAGA GCTTGCGAAA GGGTATTGAA CTCGAAGTTG TAGACATCAT | 650 |
TGAAAACGAT TCATACTCTG TTATCCTAAA GTCCAGGAAC ACCACCAACG | 700 |
ATTTTGTTCT GGCATCGGGT TGGAGCATTA TGAAGCATTC ATTAGACCTC | 750 |
CAAGAAGGTG ATGATATCAA ACTATTTTGG GATTACTTGA ATTACAAATT | 800 |
CATTATTCTC AATTTCGAAT ACAACTTAAT TCCCTAA | 850 |
>AT2G21920.1 longest ORF length:278
MSFDVRSEKI DLIKGPELPD YNMFMSQKFT SYEGKLAILL TGNGDCSFYM | 50 |
WILEDAAKHE WSKKAYVVPD FFPLDPFVLL MQRANENDIV RTFHYDDRVG | 100 |
TSDAIVESTP ASPPRHIMFS VIIRKDSPLR NLRGAKSIFK VSFTIILKTF | 150 |
IVKLIMMKDF QLDGDMIISK TLSRTDVDHH GRLFLPKNQV LSVLKKMRNV | 200 |
TKESLRKGIE LEVVDIIEND SYSVILKSRN TTNDFVLASG WSIMKHSLDL | 250 |
QEGDDIKLFW DYLNYKFIIL NFEYNLIP | 300 |
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