fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G28610 PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1)

>AT2G28610.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsmAI, BsmBI, BsmFI, BsoBI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstYI, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NciI, NcoI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, StuI, StyI, SwaI, TliI, Tsp45I, Tsp509I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 77
AluI AG|CT 115, 198, 460, 505
AlwNI CAGNNN|CTG 199
ApaI GGGCC|C 588
AvaII G|G[AT]CC 540
BanII GPuGCPy|C 588
BclI T|GATCA 387
BfaI C|TAG 183, 212
BsaHI GPu|CGPyC 33
BsaJI C|CNNGG 677
BsaWI [AT]|CCGG[AT] 68
BsiEI CGPuPy|CG 558
BsiWI C|GTACG 554
BslI CCNNNNN|NNGG 441
BsmI GAATGCN| 91
Bsp1286I G[GAT]GC[CAT]|C 588
BspDI AT|CGAT 288, 322
BsrI ACTGGN| 164, 448
BssKI |CCNGG 677
BstF5I GGATGNN| 570
BstNI CC|[AT]GG 677
BstZ17I GTA|TAC 77
ClaI AT|CGAT 288, 322
DdeI C|TNAG 201
DpnI GA-CH3|TC 49, 109, 265, 323, 386
DpnII |GATC 49, 109, 265, 323, 386
Fnu4HI GC|NGC 406
HaeIII GG|CC 587
HinfI G|ANTC 2, 83, 139
HpaII C|CGG 35, 67
Hpy188I TCN|GA 29, 86
Hpy99I CG[AT]CG| 31
HpyCH4III ACN|GT 556, 718
HpyCH4IV A|CGT 153
HpyCH4V TG|CA 96, 491, 522
MboI |GATC 49, 109, 265, 323, 386
MseI T|TAA 306, 730
MslI CAPyNN|NNPuTG 646
MspI C|CGG 35, 67
MwoI GCNNNNN|NNGC 123
N.BstNBI GAGTCNNNN|N 7
NdeI CA|TATG 383, 391
NlaIII CATG| 424, 630, 640
NlaIV GGN|NCC 167, 540, 588
PspGI |CC[AT]GG 677
PspOMI G|GGCCC 588
RsaI GT|AC 64, 553, 720
Sau3AI |GATC 49, 109, 265, 323, 386
Sau96I G|GNCC 540, 587
ScrFI CC|NGG 677
SspI AAT|ATT 485
Taqƒ¿I T|CGA 141, 287, 321, 559
TfiI G|A[AT]TC 139
TseI G|C[AT]GC 406


Click here to view TAIR data

>AT2G28610.1 length:735
ATGAGTCCTG TGGCTTCAAC GAGGTGGTGT CCGACGCCGG AGCAACTGAT 
50
GATCTTGGAA GAGATGTACC GGAGTGGTAT ACGGACTCCG AATGCGGTGC 
100
AGATACAACA GATCACAGCT CACTTGGCGT TCTATGGAAG AATCGAGGGC 
150
AAAAACGTCT TTTACTGGTT CCAGAACCAT AAGGCTAGAG ATAGACAGAA 
200
GCTGAGGAAG AAACTAGCCA AGCAACTTCA CCAGCAACAA CATCAACTTC 
250
AACTCCAACT TCAGCAGATC AAACCAAAAC CAATATCATC GATGATTTCT 
300
CAACCAGTTA ATAAGAATAT CATCGATCAT CACAATCCTT ATCATCATCA 
350
CCATCATAAT CATCATCATA ATCATCATCG TCCATATGAT CATATGTCCT 
400
TTGATTGCTG CTCTCATCCT TCTCCCATGT GTCTTCCTCA TCAGGGAACT 
450
GGAGTAGGAG AAGCTCCAAG CAAAGTGATG AATGAATATT ACTGCACCAA 
500
AAGTGGAGCT GAAGAGATAT TGATGCAAAA ATCAATCACG GGTCCAAACT 
550
CATCGTACGG TCGAGATTGG ATGATGATGA TGGATATGGG CCCACGACCA 
600
TCATATCCCT CATCATCATC ATCACCCATT TCATGTTGTA ACATGATGAT 
650
GAGCAGTCCA AAGATACCAT TGAAAACCCT GGAACTTTTC CCAATCTCAT 
700
CTATCAACTC CAAACAAGAC AGTACCAAAC TTTAA
750

>AT2G28610.1 longest ORF length:244
MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG 
50
KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS 
100
QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT 
150
GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP 
200
SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL
250