fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G32460 ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)

>AT2G32460.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspMI, BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, EagI, EarI, EciI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StyI, SwaI, Tth111I, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 179
AciI C|CGC 1397
AluI AG|CT 267, 367, 897
ApoI Pu|AATTPy 774, 1346
AvaI C|PyCGPuG 1031
BanI G|GPyPuCC 1395
BanII GPuGCPy|C 284
BclI T|GATCA 474
BfaI C|TAG 878, 893, 936, 1458
BglII A|GATCT 468, 843
BlpI GC|TNAGC 266
BsaAI PyAC|GTPu 100
BsaBI GATNN|NNATC 250, 473, 1292
BsaJI C|CNNGG 64, 1391
BsaWI [AT]|CCGG[AT] 158
BslI CCNNNNN|NNGG 978, 1010, 1079, 1341, 1432
BsoBI C|PyCGPuG 1031
Bsp1286I G[GAT]GC[CAT]|C 284
BspHI T|CATGA 390
BspT107I(HgiCI) G|G[TC][AG]CC 1395
BssKI |CCNGG 306, 603
BstAPI GCANNNN|NTGC 172
BstF5I GGATGNN| 4, 82, 351, 1222
BstNI CC|[AT]GG 306
BstYI Pu|GATCPy 220, 468, 843, 1416
BtgI C|CPuPyGG 64, 1391
DdeI C|TNAG 146, 265, 298
DpnI GA-CH3|TC 85, 219, 244, 325, 467, 473, 581, 616, 842, 855, 1127, 1415
DpnII |GATC 85, 219, 244, 325, 467, 473, 581, 616, 842, 855, 1127, 1415
DraIII CACNNN|GTG 1340
DrdI GACNNNN|NNGTC 889, 958
EaeI Py|GGCCPu 202
EcoNI CCTNN|NNNAGG 1010, 1079
EcoRI G|AATTC 774, 1346
Fnu4HI GC|NGC 572, 1397
HaeIII GG|CC 60, 201, 605, 1318, 1423
HindIII A|AGCTT 268
HinfI G|ANTC 191, 395, 494, 624, 1014, 1039, 1115
HpaII C|CGG 157, 199, 603
Hpy188I TCN|GA 768, 777
Hpy99I CG[AT]CG| 19, 25, 73
HpyCH4III ACN|GT 112, 182, 1215, 1392
HpyCH4IV A|CGT 99, 1050
HpyCH4V TG|CA 135, 1308
MboI |GATC 85, 219, 244, 325, 467, 473, 581, 616, 842, 855, 1127, 1415
MseI T|TAA 440, 1121
MslI CAPyNN|NNPuTG 349
MspI C|CGG 157, 199, 603
MwoI GCNNNNN|NNGC 172, 291, 1447
N.BstNBI GAGTCNNNN|N 1019
NciI CC|[CG]GG 603
NlaIII CATG| 389, 1437, 1453
NlaIV GGN|NCC 1383, 1395
NspI PuCATG|Py 1454
PaeR7I C|TCGAG 1031
PflMI CCANNNN|NTGG 978, 1341
PspGI |CC[AT]GG 306
RsaI GT|AC 97, 499, 760, 1186
Sau3AI |GATC 85, 219, 244, 325, 467, 473, 581, 616, 842, 855, 1127, 1415
Sau96I G|GNCC 60
ScrFI CC|NGG 306, 603
SmlI C|TPyPuAG 670, 757, 847, 967, 1019, 1031
SspI AAT|ATT 1174
StuI AGG|CCT 1319
Taqƒ¿I T|CGA 252, 629, 857, 1030
TfiI G|A[AT]TC 191, 395, 494, 624, 1115
TliI C|TCGAG 1031
TseI G|C[AT]GC 572
Tsp45I |GT[CG]AC 1069, 1299
Tsp509I |AATT 122, 506, 773, 1233, 1345
TspRI NNCA[CG]TGNN| 1069, 1411
XhoI C|TCGAG 1031


Click here to view TAIR data

>AT2G32460.1 length:1473
ATGGATGGTG GTGGAGAGAC GACGGCGACG GCTACGATGG AGGGGAGAGG 
50
GTTGAAGAAA GGGCCGTGGA CAACGACGGA GGATGCGATC TTGACGGAGT 
100
ACGTGAGAAA ACACGGTGAA GGTAATTGGA ACGCCGTGCA AAAGAACTCA 
150
GGTTTGCTCC GGTGTGGCAA AAGTTGCCGT CTACGGTGGG CGAATCATCT 
200
CCGGCCAAAT CTAAAGAAAG GATCTTTTAC TCCTGATGAA GAAAAGATCA 
250
TCATCGACCT TCACGCTAAG CTTGGAAACA AATGGGCTCG TATGGCTTCT 
300
CAGTTACCTG GAAGAACAGA CAATGAGATC AAGAACTATT GGAACACGAG 
350
GATGAAGAGA AGACAAAGAG CTGGTTTGCC TTTATACCCT CATGAGATTC 
400
AACATCAAGG GATTGATATT GATGATGAGT TTGAGTTTGA TTTAACTTCC 
450
TTTCAGTTCC AAAACCAAGA TCTTGATCAT AACCACCAAA ATATGATTCA 
500
GTACACTAAT TCTTCTAATA CTTCATCATC CTCGTCTTCA TTCTCTTCTT 
550
CATCTTCTCA ACCATCAAAA AGGCTGCGTC CTGATCCTTT AGTCTCTACT 
600
AATCCCGGCC TAAACCCGAT CCCCGATTCT TCGATGGATT TTCAAATGTT 
650
CTCTCTTTAC AACAATAGCC TTGAGAATGA CAATAACCAG TTTGGTTTCT 
700
CTGTTCCTTT GTCCTCATCA TCCTCGTCTA ACGAGGTGTG TAATCCCAAC 
750
CACATCCTTG AGTACATCTC CGAGAATTCG GACACAAGAA ATACCAATAA 
800
GAAAGACATT GATGCTATGA GTTATAGTTC ATTGCTTATG GGAGATCTTG 
850
AGATAAGATC GAGTTCTTTC CCTTTAGGAC TAGACAATAG CGTCCTAGAG 
900
CTTCCTTCAA ACCAAAGACC GACCCATTCG TTCAGTTCTA GTCCTATTAT 
950
TGACAATGGT GTCCATCTTG AGCCACCTTC TGGCAATAGT GGACTACTTG 
1000
ATGCCCTCTT GGAGGAGTCT CAAGCCTTGT CTCGAGGCGG ACTCTTCAAG 
1050
GACGTTAGGG TTTCCTCCAG TGACCTATGT GAGGTTCAAG ATAAAAGGGT 
1100
GAAGATGGAC TTTGAGAATC TTTTAATAGA TCATCTAAAC TCTTCTAATC 
1150
ATTCATCATT GGGAGCAAAC CCTAATATTC ACAACAAGTA CAATGAGCCA 
1200
ACAATGGTAA AAGTAACGGT GGATGATGAT GATGAATTAT TGACGAGCCT 
1250
TCTCAACAAC TTCCCTTCAA CCACAACACC TTTGCCTGAT TGGTATCGGG 
1300
TGACAGAAAT GCAAAACGAG GCCTCATATC TTGCCCCACC AAGTGGAATT 
1350
CTTATGGGAA ACCATCAAGG TAACGGCAGG GTGGAACCAC CCACGGTGCC 
1400
GCCTTCGTCC AGTGTAGATC CTATGGCCTC GTTGGGGTCA TGCTATTGGA 
1450
GCAACATGCC TAGCATCTGT TAG
1500

>AT2G32460.1 longest ORF length:490
MDGGGETTAT ATMEGRGLKK GPWTTTEDAI LTEYVRKHGE GNWNAVQKNS 
50
GLLRCGKSCR LRWANHLRPN LKKGSFTPDE EKIIIDLHAK LGNKWARMAS 
100
QLPGRTDNEI KNYWNTRMKR RQRAGLPLYP HEIQHQGIDI DDEFEFDLTS 
150
FQFQNQDLDH NHQNMIQYTN SSNTSSSSSS FSSSSSQPSK RLRPDPLVST 
200
NPGLNPIPDS SMDFQMFSLY NNSLENDNNQ FGFSVPLSSS SSSNEVCNPN 
250
HILEYISENS DTRNTNKKDI DAMSYSSLLM GDLEIRSSSF PLGLDNSVLE 
300
LPSNQRPTHS FSSSPIIDNG VHLEPPSGNS GLLDALLEES QALSRGGLFK 
350
DVRVSSSDLC EVQDKRVKMD FENLLIDHLN SSNHSSLGAN PNIHNKYNEP 
400
TMVKVTVDDD DELLTSLLNN FPSTTTPLPD WYRVTEMQNE ASYLAPPSGI 
450
LMGNHQGNGR VEPPTVPPSS SVDPMASLGS CYWSNMPSIC 
500