fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G33620 AT hook motif DNA-binding family protein (.1.2.3.4)

>AT2G33620.4 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, KpnI, NcoI, NheI, NotI, PacI, PstI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 216
HindIII A|AGCTT 454, 461
HpaI GTT|AAC 546
NdeI CA|TATG 647
PvuII CAG|CTG 206
SacI GAGCT|C 359
XhoI C|TCGAG 950


Click here to view TAIR data

>AT2G33620.4 length:1056
ATGTCAGGAT CTGAGACGGG TTTAATGGCG GCGACCAGAG AATCAATGCA 
50
ATTTACAATG GCTCTCCACC AGCAGCAGCA ACACAGTCAA GCTCAACCTC 
100
AGCAGTCTCA GAACAGGCCA TTGTCATTCG GTGGAGACGA CGGAACTGCT 
150
CTTTACAAGC AGCCGATGAG ATCAGTATCA CCACCGCAGC AGTACCAACC 
200
CAACTCAGCT GGTGAGAATT CTGTCTTGAA CATGAACTTG CCCGGAGGTG 
250
AGTCTGGAGG CATGACTGGA ACTGGAAGTG AGCCAGTGAA AAAGAGGAGA 
300
GGTAGACCGA GGAAATATGG GCCTGATAGT GGTGAAATGT CACTTGGTTT 
350
GAATCCTGGA GCTCCTTCTT TCACTGTCAG CCAACCTAGT AGCGGCGGCG 
400
ATGGAGGAGA GAAGAAGAGA GGAAGACCTC CTGGTTCTTC TAGCAAAAGG 
450
CTCAAGCTTC AAGCTTTAGG CTCGACTGGA ATCGGATTTA CGCCTCATGT 
500
ACTTACCGTG CTGGCTGGAG AGGATGTATC ATCCAAGATA ATGGCGTTAA 
550
CTCATAATGG ACCCCGTGCT GTGTGTGTCT TGTCTGCAAA TGGAGCCATC 
600
TCCAATGTGA CTCTCCGCCA GTCTGCCACA TCCGGTGGAA CTGTTACATA 
650
TGAGGGGAGA TTTGAGATTC TGTCTTTATC GGGATCTTTC CATTTGCTGG 
700
AGAACAATGG TCAAAGAAGC AGGACGGGAG GTCTAAGCGT GTCATTATCA 
750
AGTCCGGATG GTAATGTCCT CGGTGGCAGT GTAGCTGGTC TTCTTATAGC 
800
AGCATCACCT GTTCAGATTG TTGTTGGGAG TTTCTTACCA GACGGAGAAA 
850
AAGAACCAAA ACAGCATGTG GGACAAATGG GACTGTCGTC ACCCGTATTA 
900
CCGCGTGTGG CCCCAACGCA GGTGCTGATG ACTCCAAGTA GCCCACAATC 
950
TCGAGGCACA ATGAGTGAGT CATCTTGTGG AGGAGGACAT GGAAGCCCTA 
1000
TTCATCAGAG CACTGGAGGA CCTTACAATA ACACCATTAA CATGCCCTGG 
1050
AAGTAG
1100

>AT2G33620.4 longest ORF length:351
MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA 
50
LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR 
100
GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR 
150
LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI 
200
SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS 
250
SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL 
300
PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW 
350
K
400