| Alias |
|
| TF Classification |
| FioreDB | AT-hook (Click to show phylogenetic tree) |
| RARTF | AT-hook |
| AtTFDB | |
| PlnTFDB | |
| DATF | |
|
| TAIR short description |
AT hook motif DNA-binding family protein (.1.2.3.4) |
| TAIR annotation |
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 969 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 205; Metazoa - 5; Fungi - 3; Plants - 754; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
RE_0925_x |
| External link |
|
| Gene Ontology (GO) |
| (F) 3677: DNA or RNA binding |
->DNA binding |
| (C) 5634: nucleus |
->nucleus |
| (C) 5829: cytosol |
->cytosol |
| (P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
| (P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
|
| miRNA/tasiRNA |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
|
1 |
|
1 |
| soybean |
|
|
|
|
|
| rice |
|
|
1 |
2 |
3 |
| sorghum |
|
|
1 |
|
1 |
| physcomitrella |
|
|
|
|
|
| Total |
|
|
3 |
2 |
5 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> done |
| Plasmid construction | -> done |
| Transformed | -> done |
| T1 seed harvested | -> done |
| T2 seed harvested | -> done |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
