fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT2G47270 bHLH151, UPB1 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1)

>AT2G47270.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AvaI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BstAPI, BstEII, BstZ17I, Bsu36I, BtrI, BtsI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HgaI, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, N.BstNBI, , NarI, NlaIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PleI, PmeI, PmlI, PpuMI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SmaI, StuI, TliI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 379, 852, 3261, 4069, 4552
AccII(FnuDII) CG|CG 3414, 3418, 4236
AciI C|CGC 3608
AclI AA|CGTT 4056, 4848
AflII C|TTAAG 666
AflIII A|CPuPyGT 856, 1073, 2067, 2532, 3819, 5134, 5746
AluI AG|CT 1377, 2548, 2720, 3174, 3834, 3941, 3960, 4217, 4270, 5084, 5275, 5737, 5944
AlwNI CAGNNN|CTG 3942
ApaLI G|TGCAC 1863
ApoI Pu|AATTPy 89, 232, 797, 1457, 1748, 2166, 2383, 2789, 3001, 3356, 3895, 4530, 4878, 4891, 4921, 5030, 5256, 5845, 5935, 6029
AseI AT|TAAT 101, 310, 584, 1264, 1599, 1626, 2122, 2436, 3530, 5054, 5884
AvaII G|G[AT]CC 5498
BalI TGG|CCA 5437
BanII GPuGCPy|C 756, 4164, 5621
BclI T|GATCA 2699, 2739, 2863, 3272
BfaI C|TAG 180, 361, 1257, 1297, 2230, 2505, 3108, 3482, 3534, 4222, 5228, 5273
BglII A|GATCT 862, 948
BlpI GC|TNAGC 1273
BsaAI PyAC|GTPu 5287, 5441
BsaBI GATNN|NNATC 454, 820, 2868, 3778, 4193
BsaHI GPu|CGPyC 4011
BsaJI C|CNNGG 288, 2208, 2218, 2852, 4202, 4654
BsiHKAI G[AT]GC[AT]|C 1863
BslI CCNNNNN|NNGG 784, 1885, 2347, 4815, 4907, 5381
Bsp1286I G[GAT]GC[CAT]|C 756, 1863, 4164, 4173, 5621
BspDI AT|CGAT 928, 5991
BspHI T|CATGA 1994, 4191
BsrFI Pu|CCGGPy 1134
BsrGI T|GTACA 5756, 5919
BsrI ACTGGN| 1570, 6074
BssHII G|CGCGC 3417
BssKI |CCNGG 265, 3163
BssSI C|TCGTG 4494
BstBI TT|CGAA 933, 1652, 4924, 4943, 5219
BstF5I GGATGNN| 2857
BstNI CC|[AT]GG 265
BstUI CG|CG 3414, 3418, 4236
BstXI CCANNNNN|NTGG 3359
BstYI Pu|GATCPy 862, 948
BtgI C|CPuPyGG 2208, 2218, 4654
Cac8I GCN|NGC 1134, 2538, 3417, 3483, 3506
Cfr10I [AG]|CCGG[TC] 1134
ClaI AT|CGAT 928, 5991
DdeI C|TNAG 1272, 2782, 3627, 3936, 4005
DpnI GA-CH3|TC 237, 454, 530, 861, 925, 947, 1219, 1431, 1475, 2416, 2581, 2698, 2738, 2862, 3019, 3271, 4187, 4193, 5811, 5927, 6076
DpnII |GATC 237, 454, 530, 861, 925, 947, 1219, 1431, 1475, 2416, 2581, 2698, 2738, 2862, 3019, 3271, 4187, 4193, 5811, 5927, 6076
DraI TTT|AAA 1760, 1969, 3868, 4407, 5369, 5602, 5865
DraIII CACNNN|GTG 5361
DrdI GACNNNN|NNGTC 5392
EaeI Py|GGCCPu 5437
EcoRI G|AATTC 4878
EcoRV GAT|ATC 4741
Fnu4HI GC|NGC 2569, 3420, 3641, 4545
HaeII PuGCGC|Py 1137
HaeIII GG|CC 1241, 1323, 2502, 4870, 5436
HhaI GCG|C 1136, 3159, 3415, 3681, 4237
HinP1I G|CGC 1136, 3159, 3415, 3681, 4237
HincII GTPy|PuAC 2813, 3261, 5130
HindIII A|AGCTT 4218
HinfI G|ANTC 49, 514, 573, 763, 770, 841, 874, 930, 990, 1029, 1058, 1083, 2290, 2838, 2880, 3344, 4132, 4310, 5655, 5988
HpaII C|CGG 1133, 3162
Hpy188I TCN|GA 235, 320, 395, 466, 2328, 2427, 2762, 2850, 3347, 3628, 3826, 3937, 4196, 4294, 5500, 5652, 5870, 6085
Hpy99I CG[AT]CG| 1101, 1188, 3259, 5518
HpyCH4III ACN|GT 22, 563, 1194, 1224, 1282, 1348, 2159, 3264, 4400, 4618, 4827, 5014, 5075, 5345, 5389, 5575, 5970
HpyCH4IV A|CGT 170, 488, 2542, 2564, 2661, 2767, 4055, 4448, 4847, 5132, 5286, 5440, 5519
HpyCH4V TG|CA 621, 722, 1513, 1862, 2535, 2539, 3025, 3503, 3789, 3795, 4034, 4366, 4558, 4991, 5248
MboI |GATC 237, 454, 530, 861, 925, 947, 1219, 1431, 1475, 2416, 2581, 2698, 2738, 2862, 3019, 3271, 4187, 4193, 5811, 5927, 6076
MscI TGG|CCA 5437
MseI T|TAA 44, 53, 57, 100, 112, 309, 371, 404, 414, 420, 583, 605, 665, 679, 716, 883, 902, 1023, 1198, 1230, 1235, 1248, 1263, 1314, 1340, 1356, 1360, 1419, 1576, 1584, 1594, 1598, 1616, 1625, 1734, 1759, 1773, 1791, 1907, 1968, 1984, 2070, 2121, 2142, 2223, 2235, 2351, 2371, 2435, 2545, 2640, 2717, 2733, 2903, 2940, 3049, 3149, 3490, 3522, 3529, 3572, 3621, 3711, 3746, 3831, 3867, 3957, 4406, 4567, 4704, 4752, 4844, 5053, 5060, 5069, 5175, 5368, 5457, 5543, 5569, 5601, 5696, 5705, 5864, 5883, 5966
MslI CAPyNN|NNPuTG 2537, 3787, 3879, 5673, 5915
MspA1I C[AC]G|C[GT]G 3175
MspI C|CGG 1133, 3162
MwoI GCNNNNN|NNGC 2547, 4171, 4269, 4680
NaeI GCC|GGC 1134
NciI CC|[CG]GG 3163
NcoI C|CATGG 4654
NdeI CA|TATG 569, 1672, 2707
NgoMIV G|CCGGC 1134
NheI G|CTAGC 3483
NlaIII CATG| 197, 223, 855, 1072, 1536, 1900, 1993, 2066, 2531, 2537, 2916, 3027, 3505, 3751, 3781, 3791, 3818, 4190, 4639, 4653, 4736, 5547, 5745, 5766
NsiI ATGCA|T 723
NspI PuCATG|Py 856, 1073, 2067, 2532, 2538, 3028, 3506, 3752, 3792, 3819, 5746
PacI TTAAT|TAA 57, 1360, 1598
PciI A|CATGT 856, 1073, 2067, 2532, 3819, 5746
PflFI GACN|NNGTC 4233
PflMI CCANNNN|NTGG 2347, 4907
PshAI GACNN|NNGTC 1100, 3889
PsiI TTA|TAA 300, 1976, 3512, 5293, 5613
PspGI |CC[AT]GG 265
PvuII CAG|CTG 3175
RsaI GT|AC 1191, 2213, 2652, 2769, 2797, 5284, 5755, 5918
SalI G|TCGAC 3261
Sau3AI |GATC 237, 454, 530, 861, 925, 947, 1219, 1431, 1475, 2416, 2581, 2698, 2738, 2862, 3019, 3271, 4187, 4193, 5811, 5927, 6076
Sau96I G|GNCC 1241, 1323, 4870, 5498
ScrFI CC|NGG 265, 3163
SfcI C|TPuPyAG 63, 2843, 4550, 5388
SgrAI CPu|CCGGPyG 1135
SmlI C|TPyPuAG 644, 666, 1141
SnaBI TAC|GTA 5287
SpeI A|CTAGT 1258
SphI GCATG|C 2538, 3506
SspI AAT|ATT 435, 1423, 1648, 1721, 1895, 1965, 2075, 2119, 2198, 3434, 4963, 5541, 5887
StyI C|C[AT][AT]GG 288, 4202, 4654
SwaI ATTT|AAAT 1761, 5866
Taqƒ¿I T|CGA 760, 765, 927, 932, 938, 960, 1651, 2414, 2589, 3260, 3388, 3799, 4166, 4923, 4942, 5218, 5261, 5516, 5990
TfiI G|A[AT]TC 514, 573, 763, 770, 841, 874, 930, 990, 1029, 1058, 2290, 2838, 2880, 3344, 4132, 5655, 5988
TseI G|C[AT]GC 2569, 3641, 4545
Tsp45I |GT[CG]AC 400, 429, 1566, 1676, 3975, 5355
Tsp509I |AATT 15, 40, 55, 88, 231, 307, 311, 337, 422, 677, 690, 796, 881, 1018, 1052, 1246, 1286, 1316, 1358, 1456, 1578, 1586, 1596, 1623, 1627, 1693, 1747, 1762, 1789, 1853, 1905, 1951, 1982, 2102, 2130, 2165, 2382, 2393, 2408, 2422, 2440, 2471, 2478, 2585, 2642, 2724, 2742, 2756, 2788, 3000, 3151, 3275, 3332, 3355, 3382, 3515, 3527, 3558, 3635, 3845, 3894, 3905, 4136, 4529, 4565, 4645, 4750, 4877, 4890, 4920, 4988, 5009, 5029, 5051, 5173, 5180, 5255, 5303, 5320, 5334, 5459, 5479, 5670, 5703, 5834, 5844, 5934, 6028
TspRI NNCA[CG]TGNN| 528, 1351, 1570, 2697, 3025, 3267, 3499, 3979, 4828, 5017, 5078, 5392
Tth111I GACN|NNGTC 4233
XbaI T|CTAGA 3535, 4223
XmnI GAANN|NNTTC 232, 3437


Click here to view TAIR data

>AT2G47270 genomic sequence (4103-4411,) length:6091
cactttattc tattgtaatt tgaccgtttt attggcaggg taattttaag 
50
actcttaatt aactacagat tgtgccacac taaaatatga atttatgttt 
100
attaatgcta ttattaacga actatttact tgttcatata tttggttata 
150
cttttgttac aagaaaaact tacgtttctc gctagtaaca ttattgttca 
200
tgtagtgtag taaatccata aagacatgaa aaaattctga tctaccattg 
250
agtattccca aaccacctgg ctgaataagt aagagttcct tggtatttgt 
300
tataagaaaa ttaattgaaa tcagatataa aatctttgaa ttatacaagt 
350
aaatatcttg acctagtaaa tgttaatagt agacacaccc cacaatcaga 
400
gtgacttaaa gatgtttaag tttaatttgg tcacaatatt tttacaaaag 
450
attttgatct gctttctcgg acaaacaaac caacaaagaa cgtagaacag 
500
gactatgaga aagagattct ctttaccagt ggatcgtaag aaaatgctaa 
550
agcaataaca acaactgtca tatgattcca gacattaata cacagacata 
600
aatggattaa ggacaagtcg tttgcatcaa tcaaatccag taactcaagt 
650
aaagtctttg aaagtcttaa gaaagcataa ttaagcaaga caattaggaa 
700
atgagtgctt gaaaacttta atatgcataa ataaacagag tgataacttt 
750
ttgtcgggct ctcgaatcga gattcatacc aaacataggt aataccaaat 
800
ttggaaatag aaaacgatag aaatcatcaa cgcaagggaa tgattccaaa 
850
agtagacatg tagatcttgt ttacgattcc caaattaaag caacatctaa 
900
atcttaaaat caccaaaatc aaaagagatc gattcgaaat cgaagacaga 
950
tctggtaaaa atcgaAAAGA CAGATTACGA GTTTGTGCGT GAATCTAATC 
1000
CAACAACAAA GATTATAGGA ATTGTTAAAG AATCTCTTAC ATAAAGCCTG 
1050
TTGAATTAGA TTCAAGCACA AAACATGTAA TACGACTCTT CTAATGACAA 
1100
tcgtcgtatc tttttctcac agagactttt ttcgccggcg ctcaagaaga 
1150
aaaagaagaa gaagaagaga gacctaaatc atctgtatcg tcgtacagtt 
1200
taaccatata tcagtttatg gatcacagta tttaagttaa agggccaaat 
1250
taaacccact agtattaatg ggcttagccc caactgtaat tcctgcctct 
1300
agcccaataa gtattttaat tatgggccaa atcaataata gttaaaatac 
1350
agtgccgtta attaaactaa actatcatag ctatatatta tagtatagta 
1400
ttattactaa atatattttc ttaatattgg ttgatctttt agtttttttt 
1450
atcataaaat tttgagtttt ttatttgatc cattttttta tttctaaatc 
1500
tatatataca tttttgcatc cattttgtga aataaatcat ggagttggga 
1550
tttatttaca atggttgtca ctggatttta attatttaat tttttttaat 
1600
taatagtttg tattttttta aggcaattaa ttgtgtaaca aaccaaaaat 
1650
attcgaaata tatggtaatc ccatatgtca cgcaaaacac gataaattat 
1700
cttctcctta tctcacctac aatattcact aaatcttaaa acaaccaaaa 
1750
tttgaactat ttaaattatt tctattaaat atcggcaatc aattaaaaca 
1800
aacattgtga aacaaaccaa aatacattta caatcccgta aaatgagcaa 
1850
acccaattat atgtgcacct aaaaacattc cttatcttgg tttgaatatt 
1900
ccatgaaatt aaaagtccat aactttttcg gtataaaatc acaatcataa 
1950
ctaattcaac aactaatatt taaacttata aaaaattaaa aaatcatgag 
2000
acaaaaaata tagcgggacg gatttagatt gatatgaata gcaggacggg 
2050
tttggattga tataacacat gttaaatatt tattttatta ttttatcatc 
2100
accaattttt ttagttacaa tattaatata aaattatata actttaatac 
2150
taaactaaaa ccgtaaaatt catattatta tatatatata tataaaaaat 
2200
atttgtcccg tggtgtacca cggattaaat cctagtttaa gatttatttt 
2250
tgtatcattt attggaagac agaacattca acatataata gattctgctg 
2300
atatggtctt cttattgttt tacttctttc tgatatatat accattttct 
2350
ggttaaaaca actattatga tattaacaaa ggaaatttcg taaaaattat 
2400
acataagata attactcgat cataatttcc gaaacattaa taattttctg 
2450
gtaataaaaa atatatataa aaaattgtga attgggatat agatgtgttg 
2500
ggtggcctag acgaataggg aggatataag aacatgtgca tgcacgttaa 
2550
gctaatatac atacaacgtg ctgctaacaa gcgatcaatt tcgaccacta 
2600
aacactccat tatggctact tattatatgt ataaacctac cttaattagt 
2650
taggtacttt tcacgttacc ttgaaaccta taaaatatag acatacactg 
2700
atcaatcata tgcgaatgtt aagctaattc tcatttaatg atcaatttat 
2750
atatctcaat tatcagagac gtacatatat gtctaagaga atttgtaagt 
2800
acaatgtttc gtgttgacgg cgatgggaga tatacattga atctatagtc 
2850
tccgaggatg tttgatcaac atcgctccac gaatctgctt ttctttttct 
2900
tttcttaaaa ataaacacat gacgagaaag aacataatct tttaaggtgc 
2950
ttcaatcaaa tccactcact aaaataaaaa tcctaaatac gaaagtccat 
3000
aaattcaaag gaacacagaa gatcactgca tgttcttgtg tctttttata 
3050
ttaagacctt atcccattat ccaacatcgt tatctacttt gtccaaaaaa 
3100
ataaaacacc tagaaatgct tttgttatat cattaggtta ttcatatttc 
3150
ttaattagtt gcgccgggtt atatcagctg gaaataatga gatatataac 
3200
gacttgataa aagcaaaagc attatgacaa ccaaatagtc atattttatc 
3250
tatcatctcc gtcgacagtg gtgatcaatt caaactatat acattgtagc 
3300
gaaactcaaa cactaatata ttgtatgttt ctaaattagt ttacgaatca 
3350
gaccaaaatt ttgggagaaa tataaaataa gataattttt cgatagttgt 
3400
tttgactttt gctaacgcgc gcggcataat atgaatattt tctttttcat 
3450
cttatcaacc tatatatctg tctatttcaa tcgctagcgt cttaatacac 
3500
tgattgcatg cttataaatt agattaagaa ttaatctaga aagataatgg 
3550
cataaagata attatattct tcgttaatgc ctgacttttt ttttttggtt 
3600
tgcttcaatc cgcccgactt tgttaatctc agaacaaatt ggctgcgaaa 
3650
gtaaaataaa ataaaatgaa aaaatggata aagcgcaaca aaggaggaat 
3700
aagacagggt gtttaaggtg atgtgaatgg gaagaaagtt ggtgttatta 
3750
agcatgtaag agagttgggt agtgatgata atcatgtgag tgcatgtgca 
3800
tcgagttgta ttttgatgac atgtcctctg atttaagcta aaccctaatt 
3850
atccatcaaa aacaacattt aaaacaccct tgtggacact tgtcaaattc 
3900
tcatccaatt cttttgagag ataaaaggag aaccttctca gaagctgtaa 
3950
tctccatttt aagctatata taaaggtcac tgacctctat gtatgtctat 
4000
ataaactaag ggcgtctcat actctcatat atatttgcat ctaatcttgt 
4050
aagcaaacgt tatcacttgt ctacacaaca ttctttcatt tacaataata 
4100
atATGGGTGT AACATTAGAA GGACAAAGAA AGGAATCAAT TTGGGTTTTG 
4150
ATGAGAAGAC AAAGGGCTCG AAGGGCACTT GTGAAGAAGA TCATGATCCG 
4200
ACCAAGGAAG AGTGTAGAAG CTTCTAGAAG ACCTTGTCGC GCAATACACA 
4250
GACGAGTGAA GACGCTAAAA GAGCTTGTTC CCAACACCAA AACATCAGAA 
4300
GGTTTAGATG GACTCTTTAG ACAAACGGCA GATTATATCT TGGCTTTGGA 
4350
AATGAAAGTG AAAGTTATGC AGACAATGGT TCAGGTTTTG ACCGAAACTA 
4400
ACTGTGTTTA Aaagccttca tatatttttt gtatatcttg ttggatttta 
4450
cgttcttttt agtttttatt tgttcgtgtt tattttttat tatctcgtgt 
4500
gattgtcttg tgttgcttat atagaaaagg aatttggttt atcttgctgc 
4550
tgtagactat gcagaaaatt aaatatcaaa aatatatatg tattatatgc 
4600
ttatctaaat aacagatgac tgttggttcg gcaaaaaaaa catgataatt 
4650
gttccatggg aatagttttt gtgtgctaca ttagcaaaga acaaagggtc 
4700
atttcttaaa aaggttgtaa aggaactatg ttgtaaacat gatatcaata 
4750
aaattaagtt cagtcggttg gagaaaatac aaatgtaggg aggtaacagg 
4800
tattttttac caataaaggg acaaaacact gttgaaaaag aatgtttaac 
4850
gttgggctgt gaaagtgcgt gggccacgaa ttcaaatacc gaatttttag 
4900
tccatatagt ggaagcatcc aaattcgaag ttcaggctca ccttcgaact 
4950
tgtgaaagtt tcaatatttc tattcatttg aaagttcata attgcaaact 
5000
atgatttgga aattacagtg aaagaacttg aattttagtc ttgaaatatc 
5050
aaaattaatc cttaaactat ttaacacagt gagttagcta tattttgttt 
5100
tttcattcgt gttttccata ttatttgttg ttgacgtgtt gttactacgc 
5150
tctccattta gggtgttaca aataaattaa aaattgcgat gaccaaaaaa 
5200
aagaatatac cgattatttt cgaatagttc taggcatcaa tagtggatat 
5250
gcagaaaatt tatcgagaag actactagct tcatagtacg tattataacg 
5300
atgtaattta cttttcattg taattctttc aaagtaattg gtaaaactgt 
5350
gttatgtcac tatgtgcttt taaatcctgc tgttggacta cagtgtcgct 
5400
ctgtgataat gatagataac agatacaaat gtttgatggc cacgtatcat 
5450
ttagcccttt aatttatttg agatgacacg aattggttgt gatgaaatgg 
5500
tccgacattt tattatctcg acgttgattt ggggttcaac aatattaaca 
5550
tggcactaca catttattct ttaacaccgt gtagagatgg caagtaaagt 
5600
ctttaaatgg gcttataaac gggctcattt gattactcaa acatatatgg 
5650
tttccgattc ttccaaaaca taattatgtg atattttgtt tacttgctta 
5700
ataaaattaa gcatatagtt ttttttatca tatagtttag ctataacatg 
5750
ttatctgtac actaactcat ggtttacatt gcggttattt tattttagaa 
5800
aatgttttcg gtgatccttc attactttcg tatgtaattc ctataaattt 
5850
tgattatacc gacatttaaa tccgaaaata tctattaata tttgccttgc 
5900
gacttcgttt cacttctatg tacaatatga tccaaaattt cggttagcta 
5950
ttgtcttttt ttttttttta accgtattag agaggtagga atcgatttag 
6000
gaggaggata agtgctacca cacatttcaa attcgttgaa cctttttaca 
6050
tataagaaaa aatatcaaac taaactggat cgttgtccga t
6100