fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G02310 AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)

>AT3G02310.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 360
HindIII A|AGCTT 92
PstI CTGCA|G 171
SacI GAGCT|C 19


Click here to view TAIR data

>AT3G02310.1 length:753
ATGGGAAGAG GAAGAGTAGA GCTCAAGAGG ATAGAGAACA AAATCAACAG 
50
ACAAGTGACG TTTGCTAAAC GTAGAAATGG TTTGCTGAAA AAAGCTTATG 
100
AGCTTTCTGT TCTCTGCGAT GCTGAAGTCT CTCTCATCGT CTTCTCCAAC 
150
CGTGGCAAGC TCTACGAGTT CTGCAGCACC TCCAACATGC TCAAGACACT 
200
GGAAAGGTAT CAGAAGTGTA GCTATGGCTC CATTGAAGTC AACAACAAAC 
250
CTGCTAAAGA GCTTGAGAAC AGCTACAGAG AGTACTTGAA GCTGAAAGGT 
300
AGATATGAAA ATCTGCAACG TCAGCAGAGA AATCTTCTTG GAGAGGATCT 
350
TGGACCTCTG AATTCAAAGG AGCTAGAGCA GCTTGAGCGT CAACTAGACG 
400
GCTCTCTGAA GCAAGTTCGC TGCATCAAGA CACAGTATAT GCTTGACCAG 
450
CTCTCTGATC TTCAAGGTAA GGAGCATATC TTGCTTGATG CCAACAGAGC 
500
TTTGTCAATG AAGCTGGAAG ATATGATCGG CGTGAGACAT CACCATATAG 
550
GAGGAGGATG GGAAGGTGGT GATCAACAGA ATATTGCCTA TGGACATCCT 
600
CAGGCTCATT CTCAGGGACT ATACCAATCT CTTGAATGTG ATCCCACTTT 
650
GCAAATTGGA TATAGCCATC CAGTGTGCTC AGAGCAAATG GCTGTGACGG 
700
TGCAAGGTCA GTCCCAACAA GGAAACGGCT ACATCCCTGG CTGGATGCTG 
750
TGA
800

>AT3G02310.1 longest ORF length:250
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIVFSN 
50
RGKLYEFCST SNMLKTLERY QKCSYGSIEV NNKPAKELEN SYREYLKLKG 
100
RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR CIKTQYMLDQ 
150
LSDLQGKEHI LLDANRALSM KLEDMIGVRH HHIGGGWEGG DQQNIAYGHP 
200
QAHSQGLYQS LECDPTLQIG YSHPVCSEQM AVTVQGQSQQ GNGYIPGWML 
250