fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G02310 (AGL4, SEP2)

Alias AGL4, SEP2
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SEPALLATA1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
TAIR annotation MADS-box protein, binds K domain of AG in vivo (.1)
Gene model
Gene model cDNA support
AT3G02310.1 87
Entry clone (w/o stop) RE_02E02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48481: developmental processes ->plant ovule development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 1 3
soybean 1 14 15
rice 1 7 8
sorghum 2 4 6
physcomitrella
Total 1 5 26 32
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
GDMNKQLRLKLEAEGF at 164/245 in soybean Gm017817 (Type III)
WGVCGSLSLSLCVCVC at 32/401 in sorghum Sb023523 (Type III)
GDMNKQLRLKLEAEGF at 164/245 in soybean Gm005933 (Type III)
EANQERLHLALDPSLH at 202/225 in sorghum Sb003019 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        floral homeotic change, tendency to occur ectopic carpel

         abnormal flower (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID27
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           no phenotype 
            
          

         

         

          Comment