fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G04060 ANAC046 NAC domain containing protein 46 (.1)

>AT3G04060.1 CDS map

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Uncut enzymes: AatII, Acc65I, AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MseI, MslI, MwoI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, Tsp45I, TspRI, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 715
AccII(FnuDII) CG|CG 142
AccIII(BspMII) T|CCGGA 775
AciI C|CGC 141, 471, 705, 894
AgeI A|CCGGT 868
AluI AG|CT 388, 647, 739, 1010
AvaII G|G[AT]CC 764
BanI G|GPyPuCC 658
BanII GPuGCPy|C 389
BclI T|GATCA 579, 827
BfaI C|TAG 519, 1008
BglII A|GATCT 326
BsaJI C|CNNGG 64, 143, 184
BsaWI [AT]|CCGG[AT] 655, 775, 868
BsiEI CGPuPy|CG 260, 284, 308
BsiHKAI G[AT]GC[AT]|C 389
BslI CCNNNNN|NNGG 268
Bsp1286I G[GAT]GC[CAT]|C 389, 659
BspEI T|CCGGA 775
BspT107I(HgiCI) G|G[TC][AG]CC 658
BsrDI GCAATGNN| 942
BsrFI Pu|CCGGPy 868
BssKI |CCNGG 63, 262, 310, 621, 639
BstF5I GGATGNN| 267, 357, 481, 949
BstUI CG|CG 142
BstYI Pu|GATCPy 189, 326, 618, 778
BtgI C|CPuPyGG 143, 184
Cfr10I [AG]|CCGG[TC] 868
DdeI C|TNAG 587
DpnI GA-CH3|TC 38, 188, 245, 325, 578, 617, 674, 777, 826, 985
DpnII |GATC 38, 188, 245, 325, 578, 617, 674, 777, 826, 985
EcoRV GAT|ATC 909
Fnu4HI GC|NGC 13, 144
HaeIII GG|CC 641
HincII GTPy|PuAC 635, 665, 715
HindIII A|AGCTT 648
HinfI G|ANTC 26, 561, 932
HpaII C|CGG 62, 261, 309, 620, 639, 654, 774, 867, 935
Hpy188I TCN|GA 133, 248, 257, 780, 879
HpyCH4III ACN|GT 277, 285
HpyCH4V TG|CA 202, 420
MboI |GATC 38, 188, 245, 325, 578, 617, 674, 777, 826, 985
MfeI C|AATTG 411
MspA1I C[AC]G|C[GT]G 143
MspI C|CGG 62, 261, 309, 620, 639, 654, 774, 867, 935
NciI CC|[CG]GG 63, 262, 310, 621, 639
NcoI C|CATGG 184
NlaIII CATG| 183, 422
NlaIV GGN|NCC 658
NsiI ATGCA|T 421
PflFI GACN|NNGTC 288
RsaI GT|AC 522
SacI GAGCT|C 389
SacII CCGC|GG 143
SalI G|TCGAC 715
Sau3AI |GATC 38, 188, 245, 325, 578, 617, 674, 777, 826, 985
Sau96I G|GNCC 642, 764
ScaI AGT|ACT 523
ScrFI CC|NGG 63, 262, 310, 621, 639
SmlI C|TPyPuAG 552, 860
SspI AAT|ATT 446
StyI C|C[AT][AT]GG 184
Taqƒ¿I T|CGA 714
TfiI G|A[AT]TC 26, 561, 932
TseI G|C[AT]GC 147
Tsp509I |AATT 410, 746, 770
Tth111I GACN|NNGTC 288
XmnI GAANN|NNTTC 124, 447


Click here to view TAIR data

>AT3G04060.1 length:1017
ATGGTGGAAG AAGGCGGCGT AGTTGTGAAT CAAGGAGGAG ATCAGGAGGT 
50
GGTGGATTTG CCTCCGGGGT TTCGGTTTCA CCCTACTGAT GAAGAGATAA 
100
TAACTCACTA CCTCAAAGAG AAGGTCTTCA ACATCCGATT TACCGCGGCA 
150
GCGATTGGTC AAGCCGACCT CAACAAGAAC GAGCCATGGG ATCTACCAAA 
200
GATTGCAAAG ATGGGGGAGA AGGAGTTTTA CTTTTTCTGC CAGAGGGATC 
250
GGAAGTATCC GACCGGGATG AGGACGAACC GTGCGACCGT GTCTGGTTAT 
300
TGGAAGGCGA CCGGGAAGGA CAAGGAGATC TTTAGAGGCA AAGGTTGTCT 
350
TGTTGGGATG AAGAAAACAC TTGTTTTCTA TACAGGAAGA GCTCCTAAAG 
400
GTGAAAAGAC CAATTGGGTT ATGCATGAAT ATCGTCTTGA TGGAAAATAT 
450
TCTTATCATA ACCTCCCCAA AACCGCAAGG GATGAATGGG TGGTGTGTAG 
500
GGTTTTTCAC AAGAACGCTC CTAGTACTAC AATCACTACT ACAAAACAAC 
550
TCTCAAGGAT TGATTCTCTT GATAACATTG ATCATCTCTT AGACTTCTCA 
600
TCTCTCCCTC CTCTCATAGA TCCGGGTTTC TTGGGTCAAC CCGGCCCAAG 
650
CTTCTCCGGT GCCCGTCAAC AACACGATCT CAAACCTGTT CTCCACCATC 
700
CTACAACCGC ACCAGTCGAC AACACTTACC TTCCTACCCA AGCTCTCAAT 
750
TTCCCTTACC ACTCGGTCCA TAATTCCGGA TCTGATTTCG GCTACGGGGC 
800
AGGTTCAGGC AATAATAACA AAGGTATGAT CAAGTTGGAG CATTCTCTTG 
850
TGAGTGTGTC TCAAGAAACC GGTTTGAGTT CCGATGTGAA CACAACCGCA 
900
ACGCCAGAGA TATCTTCTTA TCCAATGATG ATGAATCCGG CAATGATGGA 
950
TGGTAGCAAG TCAGCGTGTG ATGGTCTTGA TGACTTGATC TTCTGGGAAG 
1000
ATTTATATAC TAGCTAA
1050

>AT3G04060.1 longest ORF length:338
MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA 
50
AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY 
100
WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY 
150
SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS 
200
SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN 
250
FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA 
300
TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS
350