Locus |
Common name |
Short description |
AT3G04060 |
ANAC046 |
NAC domain containing protein 46 (.1) |
>AT3G04060.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BsrBI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, Hpy99I, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MseI, MslI, MwoI, N.BstNBI, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SapI, SbfI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, Tsp45I, TspRI, XbaI, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
715 |
AccII(FnuDII)
| CG|CG |
142 |
AccIII(BspMII)
| T|CCGGA |
775 |
AciI
| C|CGC |
141, 471, 705, 894 |
AgeI
| A|CCGGT |
868 |
AluI
| AG|CT |
388, 647, 739, 1010 |
AvaII
| G|G[AT]CC |
764 |
BanI
| G|GPyPuCC |
658 |
BanII
| GPuGCPy|C |
389 |
BclI
| T|GATCA |
579, 827 |
BfaI
| C|TAG |
519, 1008 |
BglII
| A|GATCT |
326 |
BsaJI
| C|CNNGG |
64, 143, 184 |
BsaWI
| [AT]|CCGG[AT] |
655, 775, 868 |
BsiEI
| CGPuPy|CG |
260, 284, 308 |
BsiHKAI
| G[AT]GC[AT]|C |
389 |
BslI
| CCNNNNN|NNGG |
268 |
Bsp1286I
| G[GAT]GC[CAT]|C |
389, 659 |
BspEI
| T|CCGGA |
775 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
658 |
BsrDI
| GCAATGNN| |
942 |
BsrFI
| Pu|CCGGPy |
868 |
BssKI
| |CCNGG |
63, 262, 310, 621, 639 |
BstF5I
| GGATGNN| |
267, 357, 481, 949 |
BstUI
| CG|CG |
142 |
BstYI
| Pu|GATCPy |
189, 326, 618, 778 |
BtgI
| C|CPuPyGG |
143, 184 |
Cfr10I
| [AG]|CCGG[TC] |
868 |
DdeI
| C|TNAG |
587 |
DpnI
| GA-CH3|TC |
38, 188, 245, 325, 578, 617, 674, 777, 826, 985 |
DpnII
| |GATC |
38, 188, 245, 325, 578, 617, 674, 777, 826, 985 |
EcoRV
| GAT|ATC |
909 |
Fnu4HI
| GC|NGC |
13, 144 |
HaeIII
| GG|CC |
641 |
HincII
| GTPy|PuAC |
635, 665, 715 |
HindIII
| A|AGCTT |
648 |
HinfI
| G|ANTC |
26, 561, 932 |
HpaII
| C|CGG |
62, 261, 309, 620, 639, 654, 774, 867, 935 |
Hpy188I
| TCN|GA |
133, 248, 257, 780, 879 |
HpyCH4III
| ACN|GT |
277, 285 |
HpyCH4V
| TG|CA |
202, 420 |
MboI
| |GATC |
38, 188, 245, 325, 578, 617, 674, 777, 826, 985 |
MfeI
| C|AATTG |
411 |
MspA1I
| C[AC]G|C[GT]G |
143 |
MspI
| C|CGG |
62, 261, 309, 620, 639, 654, 774, 867, 935 |
NciI
| CC|[CG]GG |
63, 262, 310, 621, 639 |
NcoI
| C|CATGG |
184 |
NlaIII
| CATG| |
183, 422 |
NlaIV
| GGN|NCC |
658 |
NsiI
| ATGCA|T |
421 |
PflFI
| GACN|NNGTC |
288 |
RsaI
| GT|AC |
522 |
SacI
| GAGCT|C |
389 |
SacII
| CCGC|GG |
143 |
SalI
| G|TCGAC |
715 |
Sau3AI
| |GATC |
38, 188, 245, 325, 578, 617, 674, 777, 826, 985 |
Sau96I
| G|GNCC |
642, 764 |
ScaI
| AGT|ACT |
523 |
ScrFI
| CC|NGG |
63, 262, 310, 621, 639 |
SmlI
| C|TPyPuAG |
552, 860 |
SspI
| AAT|ATT |
446 |
StyI
| C|C[AT][AT]GG |
184 |
Taqƒ¿I
| T|CGA |
714 |
TfiI
| G|A[AT]TC |
26, 561, 932 |
TseI
| G|C[AT]GC |
147 |
Tsp509I
| |AATT |
410, 746, 770 |
Tth111I
| GACN|NNGTC |
288 |
XmnI
| GAANN|NNTTC |
124, 447 |
Click here to view TAIR data
>AT3G04060.1 length:1017
ATGGTGGAAG AAGGCGGCGT AGTTGTGAAT CAAGGAGGAG ATCAGGAGGT | 50 |
GGTGGATTTG CCTCCGGGGT TTCGGTTTCA CCCTACTGAT GAAGAGATAA | 100 |
TAACTCACTA CCTCAAAGAG AAGGTCTTCA ACATCCGATT TACCGCGGCA | 150 |
GCGATTGGTC AAGCCGACCT CAACAAGAAC GAGCCATGGG ATCTACCAAA | 200 |
GATTGCAAAG ATGGGGGAGA AGGAGTTTTA CTTTTTCTGC CAGAGGGATC | 250 |
GGAAGTATCC GACCGGGATG AGGACGAACC GTGCGACCGT GTCTGGTTAT | 300 |
TGGAAGGCGA CCGGGAAGGA CAAGGAGATC TTTAGAGGCA AAGGTTGTCT | 350 |
TGTTGGGATG AAGAAAACAC TTGTTTTCTA TACAGGAAGA GCTCCTAAAG | 400 |
GTGAAAAGAC CAATTGGGTT ATGCATGAAT ATCGTCTTGA TGGAAAATAT | 450 |
TCTTATCATA ACCTCCCCAA AACCGCAAGG GATGAATGGG TGGTGTGTAG | 500 |
GGTTTTTCAC AAGAACGCTC CTAGTACTAC AATCACTACT ACAAAACAAC | 550 |
TCTCAAGGAT TGATTCTCTT GATAACATTG ATCATCTCTT AGACTTCTCA | 600 |
TCTCTCCCTC CTCTCATAGA TCCGGGTTTC TTGGGTCAAC CCGGCCCAAG | 650 |
CTTCTCCGGT GCCCGTCAAC AACACGATCT CAAACCTGTT CTCCACCATC | 700 |
CTACAACCGC ACCAGTCGAC AACACTTACC TTCCTACCCA AGCTCTCAAT | 750 |
TTCCCTTACC ACTCGGTCCA TAATTCCGGA TCTGATTTCG GCTACGGGGC | 800 |
AGGTTCAGGC AATAATAACA AAGGTATGAT CAAGTTGGAG CATTCTCTTG | 850 |
TGAGTGTGTC TCAAGAAACC GGTTTGAGTT CCGATGTGAA CACAACCGCA | 900 |
ACGCCAGAGA TATCTTCTTA TCCAATGATG ATGAATCCGG CAATGATGGA | 950 |
TGGTAGCAAG TCAGCGTGTG ATGGTCTTGA TGACTTGATC TTCTGGGAAG | 1000 |
ATTTATATAC TAGCTAA | 1050 |
>AT3G04060.1 longest ORF length:338
MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA | 50 |
AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY | 100 |
WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY | 150 |
SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS | 200 |
SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN | 250 |
FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA | 300 |
TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS | 350 |
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