fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G04060 (ANAC046)

Alias ANAC046
TF Classification
FioreDBNAC (Click to show phylogenetic tree)
RARTFNAC / CUP-SHAPED COTYLEDON2
AtTFDBNAC
PlnTFDBNAC (v3.0), NAC (v1.0)
DATFNAC
TAIR short description NAC domain containing protein 46 (.1)
TAIR annotation NAC domain containing protein 46 (NAC046); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: Arabidopsis NAC domain containing protein 87 (TAIR:AT5G18270.1); Has 3018 Blast hits to 3013 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3018; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G04060.1 26
Entry clone (w/o stop) RE_0618
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1900057: developmental processes ->positive regulation of leaf senescence
(P) 1903648: other metabolic processes ->positive regulation of chlorophyll catabolic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(F) 975: nucleic acid binding ->regulatory region DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 6 7
rice 1 1
sorghum
physcomitrella
Total 1 2 8 11
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        curled leaf

         abnormal sepal (direct input), 
         abnormal leaf (direct input), 
         fasciated stem (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID80
           Gentiana
           AtACT2pro:AtCDS-SRDX
           2006-03-30
            
           no phenotype 
            
          

         

         

          Comment