|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT3G06490 | BOS1, AtMYB108 | BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) |
>AT3G06490.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AflII, AflIII, AhdI, AlwI, AlwNI, ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, , NarI, NcoI, NdeI, NheI, NlaIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, StuI, StyI, SwaI, TliI, Tsp45I, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 211 |
| AccI | GT|[AC][TG]AC | 179 |
| AccII(FnuDII) | CG|CG | 348 |
| AciI | C|CGC | 202, 214, 471 |
| AfeI | AGC|GCT | 685 |
| AgeI | A|CCGGT | 166 |
| AluI | AG|CT | 17, 90, 173, 845, 962 |
| Aor51HI(Eco47III) | AGC|GCT | 685 |
| ApoI | Pu|AATTPy | 636, 750, 919 |
| AseI | AT|TAAT | 862 |
| AvaII | G|G[AT]CC | 50, 63 |
| BbvCI | CC|TCAGC | 844 |
| BfaI | C|TAG | 437 |
| BglII | A|GATCT | 813 |
| BsaHI | GPu|CGPyC | 211, 660 |
| BsaJI | C|CNNGG | 67, 219, 461 |
| BsaWI | [AT]|CCGG[AT] | 166, 774 |
| BslI | CCNNNNN|NNGG | 701 |
| BspHI | T|CATGA | 95, 557 |
| BsrFI | Pu|CCGGPy | 151, 166, 517 |
| BsrI | ACTGGN| | 341 |
| BssKI | |CCNGG | 309, 701 |
| BstF5I | GGATGNN| | 4, 429 |
| BstUI | CG|CG | 348 |
| BstYI | Pu|GATCPy | 813 |
| BtgI | C|CPuPyGG | 67, 219 |
| BtrI | CAC|GTC | 522 |
| BtsI | GCAGTGNN| | 651 |
| Cac8I | GCN|NGC | 151, 363, 517 |
| Cfr10I | [AG]|CCGG[TC] | 151, 166, 517 |
| DdeI | C|TNAG | 183, 843 |
| DpnI | GA-CH3|TC | 250, 328, 510, 743, 812 |
| DpnII | |GATC | 250, 328, 510, 743, 812 |
| EcoRI | G|AATTC | 919 |
| Fnu4HI | GC|NGC | 474, 480, 870, 935 |
| HaeII | PuGCGC|Py | 685 |
| HaeIII | GG|CC | 152, 463 |
| HhaI | GCG|C | 147, 684 |
| HinP1I | G|CGC | 147, 684 |
| HindIII | A|AGCTT | 18 |
| HinfI | G|ANTC | 449 |
| HpaII | C|CGG | 150, 165, 308, 516, 656, 701, 773 |
| Hpy188I | TCN|GA | 663, 746, 882, 967 |
| HpyCH4III | ACN|GT | 371, 593, 886, 944 |
| HpyCH4IV | A|CGT | 210, 521 |
| HpyCH4V | TG|CA | 354, 530, 825 |
| MboI | |GATC | 250, 328, 510, 743, 812 |
| MseI | T|TAA | 87, 191, 668, 861 |
| MspA1I | C[AC]G|C[GT]G | 846 |
| MspI | C|CGG | 150, 165, 308, 516, 656, 701, 773 |
| MwoI | GCNNNNN|NNGC | 160, 471 |
| NaeI | GCC|GGC | 151, 517 |
| NciI | CC|[CG]GG | 309, 701 |
| NgoMIV | G|CCGGC | 151, 517 |
| NlaIII | CATG| | 34, 94, 362, 556, 583 |
| NspI | PuCATG|Py | 363 |
| PvuII | CAG|CTG | 846 |
| RsaI | GT|AC | 418, 676 |
| Sau3AI | |GATC | 250, 328, 510, 743, 812 |
| Sau96I | G|GNCC | 50, 63 |
| ScaI | AGT|ACT | 419, 677 |
| ScrFI | CC|NGG | 309, 701 |
| SfcI | C|TPuPyAG | 177, 681, 792 |
| SpeI | A|CTAGT | 438 |
| SphI | GCATG|C | 363 |
| SspI | AAT|ATT | 302 |
| Taqƒ¿I | T|CGA | 255, 433, 441, 786 |
| TfiI | G|A[AT]TC | 449 |
| TseI | G|C[AT]GC | 474, 480, 870, 935 |
| Tsp509I | |AATT | 98, 399, 552, 560, 635, 749, 765, 779, 918 |
| TspRI | NNCA[CG]TGNN| | 651 |
Click here to view TAIR data
>AT3G06490.1 length:972
ATGGATGAAA AAGGAAGAAG CTTGAAGAAC AACAACATGG AAGACGAGAT | 50 |
GGACCTAAAG AGAGGTCCGT GGACTGCTGA AGAAGATTTT AAGCTCATGA | 100 |
ATTACATTGC TACTAATGGA GAAGGTCGCT GGAACTCTCT TTCTCGTTGC | 150 |
GCCGGCCTCC AACGCACCGG TAAAAGCTGT AGACTAAGGT GGTTAAACTA | 200 |
TCTCCGCCCT GACGTCCGCC GTGGAAACAT TACACTTGAA GAACAACTCT | 250 |
TGATCCTCGA ACTTCATTCC CGTTGGGGAA ATAGATGGTC AAAAATCGCA | 300 |
CAATATTTAC CGGGAAGAAC GGACAACGAG ATCAAGAACT ACTGGAGGAC | 350 |
GCGGGTGCAA AAGCATGCGA AACAGTTGAA ATGTGATGTG AATAGCCAAC | 400 |
AATTCAAAGA CACAATGAAG TACTTGTGGA TGCCTCGACT AGTCGAGAGG | 450 |
ATTCAGTCAG CCTCGGCCTC ATCCGCAGCA GCAGCCACCA CCACAACCAC | 500 |
CACCACCACA GGATCAGCCG GCACGTCATC TTGCATCACA ACCTCTAACA | 550 |
ATCAATTCAT GAATTACGAC TACAACAACA ACAACATGGG ACAACAGTTT | 600 |
GGTGTAATGA GCAACAATGA TTATATCACG CCTGAAAATT CCAGCGTGGC | 650 |
AGTGTCTCCG GCGTCAGACT TAACGGAGTA CTACAGCGCT CCAAACCCTA | 700 |
ACCCGGAATA CTATTCGGGT CAAATGGGGA ATAGTTATTA TCCAGATCAG | 750 |
AATTTAGTGA GTTCACAATT ATTACCGGAT AATTATTTCG ACTATAGTGG | 800 |
ATTATTAGAC GAAGATCTAA CGGCTATGCA AGAGCAGAGT AACCTCAGCT | 850 |
GGTTTGAAAA CATTAATGGT GCTGCTTCTT CTTCAGACAG TTTATGGAAC | 900 |
ATTGGAGAAA CTGATGAAGA ATTCTGGTTC TTACAGCAGC AACAACAGTT | 950 |
CAACAATAAT GGTAGCTTCT GA | 1000 |
>AT3G06490.1 longest ORF length:323
MDEKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC | 50 |
AGLQRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA | 100 |
QYLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSQQFKDTMK YLWMPRLVER | 150 |
IQSASASSAA AATTTTTTTT GSAGTSSCIT TSNNQFMNYD YNNNNMGQQF | 200 |
GVMSNNDYIT PENSSVAVSP ASDLTEYYSA PNPNPEYYSG QMGNSYYPDQ | 250 |
NLVSSQLLPD NYFDYSGLLD EDLTAMQEQS NLSWFENING AASSSDSLWN | 300 |
IGETDEEFWF LQQQQQFNNN GSF | 350 |