fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G06490 (BOS1, AtMYB108)

Alias BOS1, AtMYB108
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1)
TAIR annotation putative transcription factor MYB108 (MYB108) mRNA, (.1)
Gene model
Gene model cDNA support
AT3G06490.1 7
Entry clone (w/o stop) RE_1385_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6357: transcription,DNA-dependent ->regulation of transcription from RNA polymerase II promoter
(P) 6952: response to stress ->defense response
(P) 9620: response to abiotic or biotic stimulus ->response to fungus
(P) 9651: response to abiotic or biotic stimulus ->response to salt stress
(P) 9723: other biological processes ->response to ethylene
(P) 9737: other biological processes ->response to abscisic acid
(P) 9753: other biological processes ->response to jasmonic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 4 1 6
rice 2 2 4
sorghum 2 1 3
physcomitrella
Total 2 11 4 17
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
QSEDEMDLRRGPWTVDE at 23/341 in soybean Gm042133 (Type II)
SCEDEMDLRRGPWTVDE at 19/322 in soybean Gm045910 (Type Ia)
LFPQGLDLQSMDPNTPWN at 282/322 in soybean Gm045910 (Type Ia)
QSEDEMDLRRGPWTVDE at 24/340 in soybean Gm023935 (Type II)
SSEDEMDLRRGPWTVDE at 19/325 in soybean Gm019269 (Type II)
QSEDEMDLRRGPWTVDE at 23/330 in soybean Gm042134 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID550
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 1 line 
           no phenotype 
            
          

         

         

          Comment