Locus |
Common name |
Short description |
AT3G15030 |
TCP4, MEE35 |
maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) |
>AT3G15030.1 CDS map
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Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstEII, BstXI, BstZ17I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MseI, MslI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AatII
| GACGT|C |
945 |
AccI
| GT|[AC][TG]AC |
123 |
AccII(FnuDII)
| CG|CG |
182 |
AciI
| C|CGC |
23, 139, 330, 351, 381, 407, 413, 512, 632, 753 |
AgeI
| A|CCGGT |
1107 |
AluI
| AG|CT |
303, 312, 441, 538, 978 |
ApoI
| Pu|AATTPy |
835, 1153 |
AvaII
| G|G[AT]CC |
705, 996 |
BalI
| TGG|CCA |
966 |
BanI
| G|GPyPuCC |
47 |
BanII
| GPuGCPy|C |
304 |
BfaI
| C|TAG |
252, 347, 854 |
BglII
| A|GATCT |
672 |
BlpI
| GC|TNAGC |
311 |
BsaAI
| PyAC|GTPu |
173 |
BsaHI
| GPu|CGPyC |
945 |
BsaJI
| C|CNNGG |
322, 1128 |
BsaWI
| [AT]|CCGG[AT] |
127, 564, 1107 |
BsiEI
| CGPuPy|CG |
246 |
BsiHKAI
| G[AT]GC[AT]|C |
304 |
BslI
| CCNNNNN|NNGG |
268, 570, 963, 1134, 1199 |
Bsp1286I
| G[GAT]GC[CAT]|C |
304 |
BspT107I(HgiCI)
| G|G[TC][AG]CC |
47 |
BsrFI
| Pu|CCGGPy |
179, 1107 |
BssKI
| |CCNGG |
322, 698, 1128 |
BstAPI
| GCANNNN|NTGC |
154 |
BstBI
| TT|CGAA |
594 |
BstF5I
| GGATGNN| |
64, 703 |
BstNI
| CC|[AT]GG |
322 |
BstUI
| CG|CG |
182 |
BstYI
| Pu|GATCPy |
672 |
Bsu36I
| CC|TNAGG |
1146 |
Cac8I
| GCN|NGC |
306 |
Cfr10I
| [AG]|CCGG[TC] |
179, 1107 |
DdeI
| C|TNAG |
286, 310, 988, 1145 |
DpnI
| GA-CH3|TC |
671, 1024, 1040, 1076 |
DpnII
| |GATC |
671, 1024, 1040, 1076 |
EaeI
| Py|GGCCPu |
966 |
EcoO109I
| PuG|GNCCPy |
997 |
EcoRI
| G|AATTC |
835, 1153 |
Fnu4HI
| GC|NGC |
26, 66, 76, 82, 351, 416, 686, 821, 871, 880, 1205 |
HaeIII
| GG|CC |
168, 965, 1190 |
HhaI
| GCG|C |
181 |
HinP1I
| G|CGC |
181 |
HinfI
| G|ANTC |
190, 209, 326, 498, 525, 531, 596, 845, 1132, 1138 |
HpaII
| C|CGG |
126, 178, 563, 635, 698, 1106, 1128 |
Hpy188I
| TCN|GA |
3, 60, 485, 528, 759, 831, 838, 848, 989, 1135 |
Hpy99I
| CG[AT]CG| |
58, 712, 829, 943, 1073, 1211 |
HpyCH4III
| ACN|GT |
49, 710, 1015, 1181, 1213 |
HpyCH4IV
| A|CGT |
56, 172, 944 |
HpyCH4V
| TG|CA |
99, 155, 337, 609, 687, 720 |
MboI
| |GATC |
671, 1024, 1040, 1076 |
MscI
| TGG|CCA |
966 |
MspA1I
| C[AC]G|C[GT]G |
353, 870 |
MspI
| C|CGG |
126, 178, 563, 635, 698, 1106, 1128 |
MwoI
| GCNNNNN|NNGC |
82, 154, 204, 311, 360, 416, 641, 877 |
N.BstNBI
| GAGTCNNNN|N |
503 |
NciI
| CC|[CG]GG |
698, 1128 |
NlaIII
| CATG| |
1021 |
NlaIV
| GGN|NCC |
47, 588, 996 |
PflMI
| CCANNNN|NTGG |
963 |
PmlI
| CAC|GTG |
173 |
PpuMI
| PuG|G[AT]CCPy |
997 |
PspGI
| |CC[AT]GG |
322 |
SacI
| GAGCT|C |
304 |
Sau3AI
| |GATC |
671, 1024, 1040, 1076 |
Sau96I
| G|GNCC |
168, 705, 996, 1190 |
ScrFI
| CC|NGG |
322, 698, 1128 |
SpeI
| A|CTAGT |
855 |
Taqƒ¿I
| T|CGA |
243, 500, 533, 593, 649, 809 |
TfiI
| G|A[AT]TC |
209, 326, 525, 531, 596, 845, 1132, 1138 |
TseI
| G|C[AT]GC |
79, 354, 686, 821, 1205 |
Tsp45I
| |GT[CG]AC |
109, 175 |
Tsp509I
| |AATT |
12, 340, 834, 1152 |
Click here to view TAIR data
>AT3G15030.1 length:1263
ATGTCTGACG ACCAATTCCA TCACCCGCCG CCTCCTTCTT CAATGAGGCA | 50 |
CCGTTCTACG TCGGATGCGG CGGACGGCGG CTGCGGCGAG ATTGTTGAGG | 100 |
TGCAAGGTGG TCACATTGTT CGGTCTACCG GAAGAAAAGA CCGCCACAGC | 150 |
AAAGTCTGCA CGGCTAAAGG GCCACGTGAC CGGCGCGTGA GACTCTCTGC | 200 |
TCACACGGCG ATTCAGTTTT ACGATGTTCA AGACAGGCTT GGTTTCGACC | 250 |
GACCTAGCAA AGCCGTTGAT TGGCTTATCA AAAAGGCTAA GACTTCCATT | 300 |
GACGAGCTCG CTGAGCTTCC TCCCTGGAAT CCCGCCGATG CAATTCGCCT | 350 |
AGCCGCTGCT AACGCTAAAC CCAGAAGAAC CACCGCCAAA ACCCAAATCT | 400 |
CTCCGTCTCC GCCACCGCCG CAACAGCAAC AACAACAACA ACAGCTTCAG | 450 |
TTCGGTGTTG GCTTCAACGG AGGAGGAGCA GAGCATCCGA GTAACAACGA | 500 |
GTCGAGTTTT CTCCCGCCGT CAATGGATTC AGATTCGATA GCTGACACTA | 550 |
TAAAGTCGTT TTTTCCGGTG ATTGGCTCTT CAACGGAGGC TCCTTCGAAT | 600 |
CATAACCTTA TGCACAACTA TCATCATCAG CATCCGCCGG ATTTGCTTTC | 650 |
TCGAACTAAT AGCCAAAACC AAGATCTCCG TCTCTCGCTG CAATCGTTCC | 700 |
CGGATGGTCC ACCGTCGCTT CTGCACCACC AACATCACCA CCACACCTCT | 750 |
GCTTCCGCCT CCGAGCCTAC TCTGTTCTAC GGACAGAGCA ATCCGTTAGG | 800 |
GTTTGACACA TCGAGTTGGG AGCAGCAGTC GTCGGAATTC GGAAGGATTC | 850 |
AGAGACTAGT GGCTTGGAAC AGCGGCGGTG GCGGCGGAGC AACCGATACA | 900 |
GGAAACGGAG GAGGGTTTCT GTTCGCTCCT CCTACTCCTT CAACGACGTC | 950 |
GTTTCAGCCA GTTCTTGGCC AAAGCCAACA GCTTTATTCT CAGAGGGGTC | 1000 |
CCCTTCAGTC CAGTTACAGT CCCATGATCC GTGCTTGGTT TGATCCTCAC | 1050 |
CATCATCACC AATCCATCTC CACCGACGAT CTCAACCACC ACCATCACCT | 1100 |
TCCTCCACCG GTTCACCAAT CAGCAATCCC CGGAATCGGA TTCGCCTCAG | 1150 |
GTGAATTCTC TTCGGGTTTT CGCATACCAG CACGGTTTCA GGGCCAAGAA | 1200 |
GAGGAGCAGC ACGACGGTCT CACTCACAAG CCGTCCTCTG CTTCCTCTAT | 1250 |
TTCTCGCCAT TGA | 1300 |
>AT3G15030.1 longest ORF length:420
MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS | 50 |
KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI | 100 |
DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ | 150 |
FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN | 200 |
HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS | 250 |
ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT | 300 |
GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH | 350 |
HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE | 400 |
EEQHDGLTHK PSSASSISRH | 450 |
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