fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G15030 TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3)

>AT3G15030.2 CDS map

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Uncut enzymes: Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BmrI, BpmI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssSI, BstEII, BstXI, BstZ17I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MseI, MslI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SphI, SspI, StuI, StyI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AatII GACGT|C 945
AccI GT|[AC][TG]AC 123
AccII(FnuDII) CG|CG 182
AciI C|CGC 23, 139, 330, 351, 381, 407, 413, 512, 632, 753
AgeI A|CCGGT 1107
AluI AG|CT 303, 312, 441, 538, 978
ApoI Pu|AATTPy 835, 1153
AvaII G|G[AT]CC 705, 996
BalI TGG|CCA 966
BanI G|GPyPuCC 47
BanII GPuGCPy|C 304
BfaI C|TAG 252, 347, 854
BglII A|GATCT 672
BlpI GC|TNAGC 311
BsaAI PyAC|GTPu 173
BsaHI GPu|CGPyC 945
BsaJI C|CNNGG 322, 1128
BsaWI [AT]|CCGG[AT] 127, 564, 1107
BsiEI CGPuPy|CG 246
BsiHKAI G[AT]GC[AT]|C 304
BslI CCNNNNN|NNGG 268, 570, 963, 1134, 1199
Bsp1286I G[GAT]GC[CAT]|C 304
BspT107I(HgiCI) G|G[TC][AG]CC 47
BsrFI Pu|CCGGPy 179, 1107
BssKI |CCNGG 322, 698, 1128
BstAPI GCANNNN|NTGC 154
BstBI TT|CGAA 594
BstF5I GGATGNN| 64, 703
BstNI CC|[AT]GG 322
BstUI CG|CG 182
BstYI Pu|GATCPy 672
Bsu36I CC|TNAGG 1146
Cac8I GCN|NGC 306
Cfr10I [AG]|CCGG[TC] 179, 1107
DdeI C|TNAG 286, 310, 988, 1145
DpnI GA-CH3|TC 671, 1024, 1040, 1076
DpnII |GATC 671, 1024, 1040, 1076
EaeI Py|GGCCPu 966
EcoO109I PuG|GNCCPy 997
EcoRI G|AATTC 835, 1153
Fnu4HI GC|NGC 26, 66, 76, 82, 351, 416, 686, 821, 871, 880, 1205
HaeIII GG|CC 168, 965, 1190
HhaI GCG|C 181
HinP1I G|CGC 181
HinfI G|ANTC 190, 209, 326, 498, 525, 531, 596, 845, 1132, 1138
HpaII C|CGG 126, 178, 563, 635, 698, 1106, 1128
Hpy188I TCN|GA 3, 60, 485, 528, 759, 831, 838, 848, 989, 1135
Hpy99I CG[AT]CG| 58, 712, 829, 943, 1073, 1211
HpyCH4III ACN|GT 49, 710, 1015, 1181, 1213
HpyCH4IV A|CGT 56, 172, 944
HpyCH4V TG|CA 99, 155, 337, 609, 687, 720
MboI |GATC 671, 1024, 1040, 1076
MscI TGG|CCA 966
MspA1I C[AC]G|C[GT]G 353, 870
MspI C|CGG 126, 178, 563, 635, 698, 1106, 1128
MwoI GCNNNNN|NNGC 82, 154, 204, 311, 360, 416, 641, 877
N.BstNBI GAGTCNNNN|N 503
NciI CC|[CG]GG 698, 1128
NlaIII CATG| 1021
NlaIV GGN|NCC 47, 588, 996
PflMI CCANNNN|NTGG 963
PmlI CAC|GTG 173
PpuMI PuG|G[AT]CCPy 997
PspGI |CC[AT]GG 322
SacI GAGCT|C 304
Sau3AI |GATC 671, 1024, 1040, 1076
Sau96I G|GNCC 168, 705, 996, 1190
ScrFI CC|NGG 322, 698, 1128
SpeI A|CTAGT 855
Taqƒ¿I T|CGA 243, 500, 533, 593, 649, 809
TfiI G|A[AT]TC 209, 326, 525, 531, 596, 845, 1132, 1138
TseI G|C[AT]GC 79, 354, 686, 821, 1205
Tsp45I |GT[CG]AC 109, 175
Tsp509I |AATT 12, 340, 834, 1152


Click here to view TAIR data

>AT3G15030.2 length:1263
ATGTCTGACG ACCAATTCCA TCACCCGCCG CCTCCTTCTT CAATGAGGCA 
50
CCGTTCTACG TCGGATGCGG CGGACGGCGG CTGCGGCGAG ATTGTTGAGG 
100
TGCAAGGTGG TCACATTGTT CGGTCTACCG GAAGAAAAGA CCGCCACAGC 
150
AAAGTCTGCA CGGCTAAAGG GCCACGTGAC CGGCGCGTGA GACTCTCTGC 
200
TCACACGGCG ATTCAGTTTT ACGATGTTCA AGACAGGCTT GGTTTCGACC 
250
GACCTAGCAA AGCCGTTGAT TGGCTTATCA AAAAGGCTAA GACTTCCATT 
300
GACGAGCTCG CTGAGCTTCC TCCCTGGAAT CCCGCCGATG CAATTCGCCT 
350
AGCCGCTGCT AACGCTAAAC CCAGAAGAAC CACCGCCAAA ACCCAAATCT 
400
CTCCGTCTCC GCCACCGCCG CAACAGCAAC AACAACAACA ACAGCTTCAG 
450
TTCGGTGTTG GCTTCAACGG AGGAGGAGCA GAGCATCCGA GTAACAACGA 
500
GTCGAGTTTT CTCCCGCCGT CAATGGATTC AGATTCGATA GCTGACACTA 
550
TAAAGTCGTT TTTTCCGGTG ATTGGCTCTT CAACGGAGGC TCCTTCGAAT 
600
CATAACCTTA TGCACAACTA TCATCATCAG CATCCGCCGG ATTTGCTTTC 
650
TCGAACTAAT AGCCAAAACC AAGATCTCCG TCTCTCGCTG CAATCGTTCC 
700
CGGATGGTCC ACCGTCGCTT CTGCACCACC AACATCACCA CCACACCTCT 
750
GCTTCCGCCT CCGAGCCTAC TCTGTTCTAC GGACAGAGCA ATCCGTTAGG 
800
GTTTGACACA TCGAGTTGGG AGCAGCAGTC GTCGGAATTC GGAAGGATTC 
850
AGAGACTAGT GGCTTGGAAC AGCGGCGGTG GCGGCGGAGC AACCGATACA 
900
GGAAACGGAG GAGGGTTTCT GTTCGCTCCT CCTACTCCTT CAACGACGTC 
950
GTTTCAGCCA GTTCTTGGCC AAAGCCAACA GCTTTATTCT CAGAGGGGTC 
1000
CCCTTCAGTC CAGTTACAGT CCCATGATCC GTGCTTGGTT TGATCCTCAC 
1050
CATCATCACC AATCCATCTC CACCGACGAT CTCAACCACC ACCATCACCT 
1100
TCCTCCACCG GTTCACCAAT CAGCAATCCC CGGAATCGGA TTCGCCTCAG 
1150
GTGAATTCTC TTCGGGTTTT CGCATACCAG CACGGTTTCA GGGCCAAGAA 
1200
GAGGAGCAGC ACGACGGTCT CACTCACAAG CCGTCCTCTG CTTCCTCTAT 
1250
TTCTCGCCAT TGA
1300

>AT3G15030.2 longest ORF length:420
MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS 
50
KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI 
100
DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ 
150
FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN 
200
HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS 
250
ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT 
300
GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH 
350
HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE 
400
EEQHDGLTHK PSSASSISRH 
450