fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G18010 WOX1 WUSCHEL related homeobox 1 (.1)

>AT3G18010.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvrII, BaeI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, ClaI, DraI, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AciI C|CGC 93, 121, 318
AclI AA|CGTT 358
AflIII A|CPuPyGT 764
AgeI A|CCGGT 207
AluI AG|CT 54, 171, 218, 264, 324, 644, 948
AvaI C|PyCGPuG 389
AvaII G|G[AT]CC 440
BalI TGG|CCA 426
BanII GPuGCPy|C 219
BfaI C|TAG 282, 690
BsaAI PyAC|GTPu 666, 830
BsaBI GATNN|NNATC 578
BsaJI C|CNNGG 471
BsaWI [AT]|CCGG[AT] 207
BsiEI CGPuPy|CG 536
BsiHKAI G[AT]GC[AT]|C 219, 610
BsiWI C|GTACG 832
BsoBI C|PyCGPuG 389
Bsp1286I G[GAT]GC[CAT]|C 219, 610
BsrFI Pu|CCGGPy 207
BsrI ACTGGN| 424, 524
BssKI |CCNGG 495
BstAPI GCANNNN|NTGC 677
BstF5I GGATGNN| 542
BstNI CC|[AT]GG 495
BstYI Pu|GATCPy 489
BtgI C|CPuPyGG 471
BtrI CAC|GTC 74
BtsI GCAGTGNN| 138
Cac8I GCN|NGC 591
Cfr10I [AG]|CCGG[TC] 207
DdeI C|TNAG 188, 960
DpnI GA-CH3|TC 242, 488, 887, 926
DpnII |GATC 242, 488, 887, 926
DraIII CACNNN|GTG 666
EaeI Py|GGCCPu 426
Fnu4HI GC|NGC 96
HaeIII GG|CC 425
HhaI GCG|C 27
HinP1I G|CGC 27
HindIII A|AGCTT 55, 645
HinfI G|ANTC 33, 230, 475
HpaII C|CGG 206
Hpy188I TCN|GA 114, 189, 233, 538
Hpy99I CG[AT]CG| 330, 405
HpyCH4III ACN|GT 224, 332, 438, 750, 804, 810, 916, 1018
HpyCH4IV A|CGT 73, 357, 665, 724, 829
HpyCH4V TG|CA 678
MboI |GATC 242, 488, 887, 926
MscI TGG|CCA 426
MseI T|TAA 126, 248
MslI CAPyNN|NNPuTG 869
MspI C|CGG 206
MwoI GCNNNNN|NNGC 179, 677, 789
NlaIII CATG| 763, 899
NlaIV GGN|NCC 371, 588
NspI PuCATG|Py 764
PciI A|CATGT 764
PmlI CAC|GTG 666
PspGI |CC[AT]GG 495
RsaI GT|AC 334, 831
SacI GAGCT|C 219
Sau3AI |GATC 242, 488, 887, 926
Sau96I G|GNCC 440
ScrFI CC|NGG 495
SmlI C|TPyPuAG 946
SnaBI TAC|GTA 830
Taqƒ¿I T|CGA 477, 865
TfiI G|A[AT]TC 33, 230, 475
Tsp45I |GT[CG]AC 141, 807
Tsp509I |AATT 740, 921
TspRI NNCA[CG]TGNN| 138, 960, 1019
XcmI CCANNNNN|NNNNTGG 923
XmnI GAANN|NNTTC 291


Click here to view TAIR data

>AT3G18010.1 length:1053
ATGTGGACGA TGGGTTACAA CGAAGGAGGC GCAGATTCCT TCAACGGAGG 
50
AAGAAAGCTT CGTCCTCTCA TCCCACGTCT CACTTCTTGC CCCACCGCCG 
100
CCGTAAACAC CAACTCCGAC CACCGCTTTA ATATGGCAGT GGTGACGATG 
150
ACGGCGGAGC AGAACAAGAG GGAGCTGATG ATGCTAAACT CAGAACCTCA 
200
ACATCCACCG GTAATGGTGA GCTCACGGTG GAATCCGACA CCAGATCAGT 
250
TAAGGGTTCT TGAAGAGCTT TACCGACAAG GAACTAGAAC TCCTTCTGCC 
300
GACCACATCC AACAAATCAC CGCACAGCTA CGACGGTACG GGAAGATAGA 
350
AGGCAAAAAC GTTTTCTATT GGTTCCAAAA CCACAAAGCC CGAGAACGCC 
400
AGAAACGACG GCGACAAATG GAAACTGGCC ACGAAGAAAC GGTCCTTTCA 
450
ACAGCAAGTC TTGTCTCAAA CCACGGATTC GACAAGAAAG ATCCTCCAGG 
500
TTACAAGGTT GAACAGGTCA AGAACTGGAT ATGTTCGGTC GGATGCGACA 
550
CGCAACCAGA GAAACCTTCC CGTGATTATC ATCTGGAGGA GCCAGCGAAT 
600
ATACGGGTGG AGCACAATGC TCGTTGTGGA GGAGACGAGA GACGAAGCTT 
650
TTTAGGGATA AACACCACGT GGCAGATGAT GCAGTTGCCA CCTAGTTTCT 
700
ACTCTTCTTC ACATCATCAT CATCAACGTA ACCTCATTCT CAATTCACCT 
750
ACTGTTTCCT CCAACATGTC CAACAGCAAC AATGCTGTCT CTGCTTCTAA 
800
AGATACGGTC ACGGTTTCAC CTGTATTTCT ACGTACGAGA GAAGCAACGA 
850
ACACAGAGAC TTGTCATCGA AATGGTGATG ATAATAAAGA TCAAGAACAA 
900
CATGAAGATT GCTCCAACGG TGAATTGGAT CATCAAGAAC AGACACTTGA 
950
GCTGTTTCCA CTGAGAAAAG AAGGGTTTTG TAGCGATGGT GAGAAAGACA 
1000
AGAACATTAG TGGCATTCAC TGTTTCTATG AGTTTCTGCC ATTGAAGAAC 
1050
TAA
1100

>AT3G18010.1 longest ORF length:350
MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM 
50
TAEQNKRELM MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA 
100
DHIQQITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ETGHEETVLS 
150
TASLVSNHGF DKKDPPGYKV EQVKNWICSV GCDTQPEKPS RDYHLEEPAN 
200
IRVEHNARCG GDERRSFLGI NTTWQMMQLP PSFYSSSHHH HQRNLILNSP 
250
TVSSNMSNSN NAVSASKDTV TVSPVFLRTR EATNTETCHR NGDDNKDQEQ 
300
HEDCSNGELD HQEQTLELFP LRKEGFCSDG EKDKNISGIH CFYEFLPLKN 
350