fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G18010 (WOX1)

Alias WOX1
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / WUSCHEL
AtTFDBHomeobox / WOX
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description WUSCHEL related homeobox 1 (.1)
TAIR annotation Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Its mRNA is expressed in the initiating vascular primordium of the cotyledons during heart and torpedo stages. (.1)
Gene model
Gene model cDNA support
AT3G18010.1 9
Entry clone (w/o stop) RE_01H03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 48513: developmental processes ->animal organ development
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice
sorghum
physcomitrella
Total 2 2
Repression motif 
DHQEQTLELFPLRKEG at 314/350 in AT3G18010.1
Repression motif
in putative orthologs		 
SVESQTLQLFPTRNAD at 314/357 in soybean Gm013075 (Type Ib)
TGESQTLQLFPLRSGG at 334/386 in poplar Pt027776 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
abnormal flower (direct input), rough surface leaf (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project callus formation (A20793-1007)
abnormal stem (A20811-331)
fasciated stem (A20786-231)
abnormal seedling (A20793-1010)
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID669 Rosa 35S:AtCDS-SRDX 2009-06-05   More thorny  and more...
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