fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G23240 ERF1, ATERF1 ethylene response factor 1 (.1)

>AT3G23240.1 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 277, 340
AciI C|CGC 556
AluI AG|CT 218, 370, 618
ApoI Pu|AATTPy 274
AvaI C|PyCGPuG 325
AvaII G|G[AT]CC 391
BamHI G|GATCC 3
BclI T|GATCA 552
BfaI C|TAG 300
BsaJI C|CNNGG 265, 395
BsaWI [AT]|CCGG[AT] 42, 477
BslI CCNNNNN|NNGG 30
BsoBI C|PyCGPuG 325
BstBI TT|CGAA 334
BstF5I GGATGNN| 466
BstUI CG|CG 277, 340
BstYI Pu|GATCPy 3, 58
BtgI C|CPuPyGG 265
DdeI C|TNAG 125
DpnI GA-CH3|TC 2, 57, 205, 365, 551
DpnII |GATC 2, 57, 205, 365, 551
EaeI Py|GGCCPu 262
EcoO109I PuG|GNCCPy 392
Fnu4HI GC|NGC 279, 351, 372
HaeIII GG|CC 261
HhaI GCG|C 339
HinP1I G|CGC 339
HinfI G|ANTC 69, 123, 183, 294, 401, 432
HpaII C|CGG 30, 41, 476
Hpy188I TCN|GA 55, 126, 186, 203, 231, 441, 633
Hpy99I CG[AT]CG| 258
HpyCH4III ACN|GT 145, 307, 605
HpyCH4IV A|CGT 329
MboI |GATC 2, 57, 205, 365, 551
MseI T|TAA 11, 447
MspI C|CGG 30, 41, 476
MwoI GCNNNNN|NNGC 164, 348
N.BstNBI GAGTCNNNN|N 437
NcoI C|CATGG 265
NlaIII CATG| 264
NlaIV GGN|NCC 3, 391
PpuMI PuG|G[AT]CCPy 392
RsaI GT|AC 607
Sau3AI |GATC 2, 57, 205, 365, 551
Sau96I G|GNCC 391
SmlI C|TPyPuAG 222, 613
SspI AAT|ATT 47
StyI C|C[AT][AT]GG 265
Taqƒ¿I T|CGA 153, 296, 333, 380, 503
TfiI G|A[AT]TC 69, 294, 401
TseI G|C[AT]GC 372
Tsp45I |GT[CG]AC 544
Tsp509I |AATT 13, 95, 273, 407
XmnI GAANN|NNTTC 137


Click here to view TAIR data

>AT3G23240.1 length:657
ATGGATCCAT TTTTAATTCA GTCCCCATTC TCCGGCTTCT CACCGGAATA 
50
TTCTATCGGA TCTTCTCCAG ATTCTTTCTC ATCCTCTTCT TCTAACAATT 
100
ACTCTCTTCC CTTCAACGAG AACGACTCAG AGGAAATGTT TCTCTACGGT 
150
CTAATCGAGC AGTCCACGCA ACAAACCTAT ATTGACTCGG ATAGTCAAGA 
200
CCTTCCGATC AAATCCGTAA GCTCAAGAAA GTCAGAGAAG TCTTACAGAG 
250
GCGTAAGACG ACGGCCATGG GGGAAATTCG CGGCGGAGAT AAGAGATTCG 
300
ACTAGAAACG GTATTAGGGT TTGGCTCGGG ACGTTCGAAA GCGCGGAAGA 
350
GGCGGCTTTA GCCTACGATC AAGCTGCTTT CTCGATGAGA GGGTCCTCGG 
400
CGATTCTCAA TTTTTCGGCG GAGAGAGTTC AAGAGTCGCT TTCGGAGATT 
450
AAATATACCT ACGAGGATGG TTGTTCTCCG GTTGTGGCGT TGAAGAGGAA 
500
ACACTCGATG AGACGGAGAA TGACCAATAA GAAGACGAAA GATAGTGACT 
550
TTGATCACCG CTCCGTGAAG TTAGATAATG TAGTTGTCTT TGAGGATTTG 
600
GGAGAACAGT ACCTTGAGGA GCTTTTGGGG TCTTCTGAAA ATAGTGGGAC 
650
TTGGTGA
700

>AT3G23240.1 longest ORF length:218
MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG 
50
LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS 
100
TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI 
150
KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL 
200
GEQYLEELLG SSENSGTW
250