Locus |
Common name |
Short description |
AT3G23240 |
ERF1, ATERF1 |
ethylene response factor 1 (.1) |
>AT3G23240.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HindIII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
277, 340 |
AciI
| C|CGC |
556 |
AluI
| AG|CT |
218, 370, 618 |
ApoI
| Pu|AATTPy |
274 |
AvaI
| C|PyCGPuG |
325 |
AvaII
| G|G[AT]CC |
391 |
BamHI
| G|GATCC |
3 |
BclI
| T|GATCA |
552 |
BfaI
| C|TAG |
300 |
BsaJI
| C|CNNGG |
265, 395 |
BsaWI
| [AT]|CCGG[AT] |
42, 477 |
BslI
| CCNNNNN|NNGG |
30 |
BsoBI
| C|PyCGPuG |
325 |
BstBI
| TT|CGAA |
334 |
BstF5I
| GGATGNN| |
466 |
BstUI
| CG|CG |
277, 340 |
BstYI
| Pu|GATCPy |
3, 58 |
BtgI
| C|CPuPyGG |
265 |
DdeI
| C|TNAG |
125 |
DpnI
| GA-CH3|TC |
2, 57, 205, 365, 551 |
DpnII
| |GATC |
2, 57, 205, 365, 551 |
EaeI
| Py|GGCCPu |
262 |
EcoO109I
| PuG|GNCCPy |
392 |
Fnu4HI
| GC|NGC |
279, 351, 372 |
HaeIII
| GG|CC |
261 |
HhaI
| GCG|C |
339 |
HinP1I
| G|CGC |
339 |
HinfI
| G|ANTC |
69, 123, 183, 294, 401, 432 |
HpaII
| C|CGG |
30, 41, 476 |
Hpy188I
| TCN|GA |
55, 126, 186, 203, 231, 441, 633 |
Hpy99I
| CG[AT]CG| |
258 |
HpyCH4III
| ACN|GT |
145, 307, 605 |
HpyCH4IV
| A|CGT |
329 |
MboI
| |GATC |
2, 57, 205, 365, 551 |
MseI
| T|TAA |
11, 447 |
MspI
| C|CGG |
30, 41, 476 |
MwoI
| GCNNNNN|NNGC |
164, 348 |
N.BstNBI
| GAGTCNNNN|N |
437 |
NcoI
| C|CATGG |
265 |
NlaIII
| CATG| |
264 |
NlaIV
| GGN|NCC |
3, 391 |
PpuMI
| PuG|G[AT]CCPy |
392 |
RsaI
| GT|AC |
607 |
Sau3AI
| |GATC |
2, 57, 205, 365, 551 |
Sau96I
| G|GNCC |
391 |
SmlI
| C|TPyPuAG |
222, 613 |
SspI
| AAT|ATT |
47 |
StyI
| C|C[AT][AT]GG |
265 |
Taqƒ¿I
| T|CGA |
153, 296, 333, 380, 503 |
TfiI
| G|A[AT]TC |
69, 294, 401 |
TseI
| G|C[AT]GC |
372 |
Tsp45I
| |GT[CG]AC |
544 |
Tsp509I
| |AATT |
13, 95, 273, 407 |
XmnI
| GAANN|NNTTC |
137 |
Click here to view TAIR data
>AT3G23240.1 length:657
ATGGATCCAT TTTTAATTCA GTCCCCATTC TCCGGCTTCT CACCGGAATA | 50 |
TTCTATCGGA TCTTCTCCAG ATTCTTTCTC ATCCTCTTCT TCTAACAATT | 100 |
ACTCTCTTCC CTTCAACGAG AACGACTCAG AGGAAATGTT TCTCTACGGT | 150 |
CTAATCGAGC AGTCCACGCA ACAAACCTAT ATTGACTCGG ATAGTCAAGA | 200 |
CCTTCCGATC AAATCCGTAA GCTCAAGAAA GTCAGAGAAG TCTTACAGAG | 250 |
GCGTAAGACG ACGGCCATGG GGGAAATTCG CGGCGGAGAT AAGAGATTCG | 300 |
ACTAGAAACG GTATTAGGGT TTGGCTCGGG ACGTTCGAAA GCGCGGAAGA | 350 |
GGCGGCTTTA GCCTACGATC AAGCTGCTTT CTCGATGAGA GGGTCCTCGG | 400 |
CGATTCTCAA TTTTTCGGCG GAGAGAGTTC AAGAGTCGCT TTCGGAGATT | 450 |
AAATATACCT ACGAGGATGG TTGTTCTCCG GTTGTGGCGT TGAAGAGGAA | 500 |
ACACTCGATG AGACGGAGAA TGACCAATAA GAAGACGAAA GATAGTGACT | 550 |
TTGATCACCG CTCCGTGAAG TTAGATAATG TAGTTGTCTT TGAGGATTTG | 600 |
GGAGAACAGT ACCTTGAGGA GCTTTTGGGG TCTTCTGAAA ATAGTGGGAC | 650 |
TTGGTGA | 700 |
>AT3G23240.1 longest ORF length:218
MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG | 50 |
LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS | 100 |
TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI | 150 |
KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL | 200 |
GEQYLEELLG SSENSGTW | 250 |
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