fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G23240 ERF1, ATERF1 ethylene response factor 1 (.1)

>AT3G23240.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaLI, AscI, AvrII, BaeI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BssHII, BssSI, BstAPI, BstZ17I, Bsu36I, BtrI, BtsI, DraIII, EagI, EarI, EciI, EcoNI, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MspA1I, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflMI, PleI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SphI, StuI, TliI, XcmI, XhoI, XmaI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 4337, 4400
AciI C|CGC 4616
AclI AA|CGTT 5491
AflII C|TTAAG 2181, 4742, 6047
AflIII A|CPuPyGT 950, 2025, 2134, 4982, 6306
AluI AG|CT 424, 589, 1282, 1659, 1806, 2950, 4278, 4430, 4678, 5356
ApaI GGGCC|C 1223
ApoI Pu|AATTPy 246, 459, 536, 691, 1482, 1577, 1691, 1777, 1799, 2253, 2386, 2411, 2564, 2676, 3188, 3220, 3566, 3877, 4334, 5311, 5618, 5872, 5897, 6007, 6021, 6091, 6156, 6168
AseI AT|TAAT 88, 750, 2004, 2943, 4761, 5161
AvaI C|PyCGPuG 4385
AvaII G|G[AT]CC 4451, 4737, 6372
BalI TGG|CCA 2917
BamHI G|GATCC 4063
BanII GPuGCPy|C 1223
BclI T|GATCA 684, 2489, 2569, 4612
BfaI C|TAG 1616, 2379, 2416, 2495, 2705, 2736, 3273, 4360, 4904, 5306, 5469, 5830, 6230
BsaAI PyAC|GTPu 403, 1643, 2024, 2135, 3705, 6305
BsaJI C|CNNGG 630, 1147, 4325, 4455
BsaWI [AT]|CCGG[AT] 4102, 4537
BslI CCNNNNN|NNGG 217, 3666, 4090
BsmI GAATGCN| 1698
BsoBI C|PyCGPuG 4385
Bsp1286I G[GAT]GC[CAT]|C 1223
BspDI AT|CGAT 2431, 3078
BspHI T|CATGA 1424, 5344, 5594
BsrDI GCAATGNN| 1107, 5453
BsrFI Pu|CCGGPy 5625
BsrI ACTGGN| 1705, 2211
BssKI |CCNGG 618, 2096, 2500
BstBI TT|CGAA 586, 1894, 2272, 4394
BstEII G|GTNACC 5547
BstF5I GGATGNN| 2175, 2222, 2469, 4526
BstNI CC|[AT]GG 2096, 2500
BstUI CG|CG 4337, 4400
BstXI CCANNNNN|NTGG 2914, 5179
BstYI Pu|GATCPy 383, 4063, 4118
BtgI C|CPuPyGG 4325
Cac8I GCN|NGC 5581
Cfr10I [AG]|CCGG[TC] 5625
ClaI AT|CGAT 2431, 3078
DdeI C|TNAG 259, 784, 1406, 1683, 1788, 2216, 2463, 2957, 3009, 3168, 3534, 3919, 4185, 5381, 5394
DpnI GA-CH3|TC 382, 621, 683, 2488, 2568, 3035, 3079, 3147, 3286, 4010, 4062, 4117, 4265, 4425, 4611, 5556
DpnII |GATC 382, 621, 683, 2488, 2568, 3035, 3079, 3147, 3286, 4010, 4062, 4117, 4265, 4425, 4611, 5556
DraI TTT|AAA 181, 742, 2037, 2067, 2109, 2315, 3529, 3740, 5350, 5419, 6018, 6120, 6423
DrdI GACNNNN|NNGTC 6380
EaeI Py|GGCCPu 366, 2917, 4322
EcoO109I PuG|GNCCPy 1223, 4452, 4738
EcoRI G|AATTC 691
EcoRV GAT|ATC 1420, 1950, 2144
Fnu4HI GC|NGC 4339, 4411, 4432
HaeIII GG|CC 365, 596, 1166, 1222, 1355, 2916, 4321
HhaI GCG|C 4399
HinP1I G|CGC 4399
HincII GTPy|PuAC 23, 572, 3228, 4993, 6029
HindIII A|AGCTT 590
HinfI G|ANTC 130, 495, 508, 990, 1427, 1473, 1782, 2214, 2433, 2856, 2878, 3161, 3277, 3486, 3575, 3715, 3822, 4129, 4183, 4243, 4354, 4461, 4492, 4803, 5102, 5124
HpaI GTT|AAC 572, 4993, 6029
HpaII C|CGG 618, 4090, 4101, 4536, 5624
Hpy188I TCN|GA 133, 385, 834, 1512, 1981, 2527, 2549, 3289, 4115, 4186, 4246, 4263, 4291, 4501, 4693, 5288, 5482, 5782
Hpy99I CG[AT]CG| 845, 3829, 4318, 6320
HpyCH4III ACN|GT 19, 76, 102, 490, 771, 1178, 1251, 3500, 3686, 3723, 3744, 3924, 4205, 4367, 4665, 4826, 5073, 6127
HpyCH4IV A|CGT 402, 648, 668, 1152, 1642, 2023, 2134, 3704, 3809, 4389, 5490, 6304, 6318
HpyCH4V TG|CA 107, 392, 410, 929, 953, 1137, 2161, 2222, 2668, 3000, 3196, 3551, 3803, 3954, 5010, 5425, 5448, 5458, 5603, 6144, 6287, 6330, 6442
MboI |GATC 382, 621, 683, 2488, 2568, 3035, 3079, 3147, 3286, 4010, 4062, 4117, 4265, 4425, 4611, 5556
MfeI C|AATTG 1386, 5049
MscI TGG|CCA 2917
MseI T|TAA 43, 87, 180, 193, 326, 344, 515, 571, 741, 749, 1040, 1195, 1296, 1309, 1315, 1436, 1551, 1573, 1583, 2003, 2036, 2066, 2108, 2180, 2314, 2407, 2587, 2613, 2642, 2902, 2932, 2942, 3062, 3462, 3528, 3739, 3776, 4071, 4507, 4741, 4760, 4766, 4792, 4953, 4987, 4992, 5153, 5160, 5207, 5217, 5337, 5349, 5418, 5653, 5685, 5705, 5760, 5802, 5926, 6011, 6017, 6028, 6046, 6093, 6119, 6130, 6164, 6210, 6275, 6422
MslI CAPyNN|NNPuTG 1611, 1654, 2538, 3019, 3855, 5178
MspI C|CGG 618, 4090, 4101, 4536, 5624
MwoI GCNNNNN|NNGC 2803, 4224, 4408
N.BstNBI GAGTCNNNN|N 513, 995, 1478, 3166, 4497, 5107
NciI CC|[CG]GG 618
NcoI C|CATGG 4325
NdeI CA|TATG 453, 3455
NlaIII CATG| 126, 793, 949, 1423, 1561, 1648, 2224, 2759, 2823, 2867, 2907, 3013, 3299, 3482, 3578, 3900, 3993, 4058, 4324, 4958, 4981, 5106, 5343, 5593, 6255
NlaIV GGN|NCC 1166, 1223, 4063, 4451, 4737, 5169
NsiI ATGCA|T 2162, 2223, 5459
NspI PuCATG|Py 950, 2225, 2868, 3300, 4959, 4982
PciI A|CATGT 950, 4982
PflFI GACN|NNGTC 3995
PmeI GTTT|AAAC 3741
PmlI CAC|GTG 2135, 6305
PpuMI PuG|G[AT]CCPy 4452, 4738
PshAI GACNN|NNGTC 3909
PsiI TTA|TAA 200, 438, 527, 540, 868, 1099, 2651, 2662, 3177, 3380, 5677, 6151
PspGI |CC[AT]GG 2096, 2500
PspOMI G|GGCCC 1223
RsaI GT|AC 1150, 1644, 2021, 3399, 3479, 3746, 4667
Sau3AI |GATC 382, 621, 683, 2488, 2568, 3035, 3079, 3147, 3286, 4010, 4062, 4117, 4265, 4425, 4611, 5556
Sau96I G|GNCC 1166, 1222, 4451, 4737, 6372
ScrFI CC|NGG 618, 2096, 2500
SfcI C|TPuPyAG 1277
SmlI C|TPyPuAG 1430, 2181, 3935, 4282, 4673, 4742, 6047
SnaBI TAC|GTA 403
SpeI A|CTAGT 4905, 6231
SspI AAT|ATT 324, 1830, 1991, 2622, 4107, 4797, 5681, 5709, 5818, 6386
StyI C|C[AT][AT]GG 630, 1147, 4325
SwaI ATTT|AAAT 5420
Taq��I T|CGA -1, 150, 585, 979, 1453, 1893, 2271, 2430, 2834, 3077, 3569, 3819, 3827, 4213, 4356, 4393, 4440, 4563, 4819
TfiI G|A[AT]TC 495, 1782, 2433, 2856, 2878, 3277, 3486, 3575, 3715, 3822, 4129, 4354, 4461, 4803
TseI G|C[AT]GC 4432
Tsp45I |GT[CG]AC 923, 3559, 4604, 5373, 5512, 5546
Tsp509I |AATT 48, 89, 143, 196, 245, 264, 346, 458, 535, 557, 582, 690, 720, 747, 751, 819, 1021, 1301, 1385, 1414, 1438, 1463, 1481, 1548, 1576, 1690, 1776, 1792, 1798, 1887, 1899, 1923, 1960, 2001, 2005, 2196, 2252, 2277, 2385, 2402, 2410, 2563, 2576, 2599, 2639, 2653, 2664, 2675, 2809, 2838, 2894, 2940, 3173, 3187, 3206, 3219, 3281, 3520, 3565, 3661, 3672, 3708, 3755, 3876, 3942, 4073, 4155, 4333, 4467, 4762, 4862, 5002, 5048, 5141, 5162, 5219, 5310, 5339, 5387, 5401, 5617, 5714, 5762, 5800, 5853, 5871, 5896, 6006, 6013, 6020, 6090, 6140, 6155, 6167, 6201, 6239, 6247, 6290, 6327, 6435
TspRI NNCA[CG]TGNN| 774, 1815, 3617, 3919
Tth111I GACN|NNGTC 3995
XbaI T|CTAGA 3274, 5307
XmnI GAANN|NNTTC 463, 4197


Click here to view TAIR data

>AT3G23240 genomic sequence (4061-4717,) length:6460
tcgagggttt ggtggctaaa cagtcaactc ttttatggta acttttaaca 
50
attattagtc aaatgtgttt tctaaaacag tatgatgatt aattggtatc 
100
aaactgtttg caaaacactt ttctaaacat gactccgatt tggcaatttg 
150
gtcgatgtgg aatgtcgtaa taaagtttct tttaaagatt acccttaaat 
200
tataatataa acctaatctt ggtcaaacga tgccacattt gatacaaatt 
250
ccctttagac taagcaattt aggaactgaa acgatatatt ttctggcaaa 
300
cctctttgat tttagtgagt aataatatta agaaactaat ccaccttaat 
350
tcgtaaaaat gtcttcggcc attctacatc caagatccga gtttgcaaga 
400
tatacgtata ttgcatatca gtaaaagctg tatatgttta taactaacct 
450
ttcatatgga attttttcac atctaacaaa aagaaaagat actgtgaatc 
500
aaggatacga gtccagttaa gaagatttat aagcagaatt tataaagaaa 
550
gcatccaaaa ttgttgtttt tgttaacaaa ggtaattcga agcttttggc 
600
ctatgacact ttttctgtcc cggatcagtc cttggtaata cttattcaaa 
650
cgtaaacaat ccttcctaaa cgtaaaactt cgctgatcaa gaattcaacc 
700
tctccccaaa acaaaacaaa aaattggtta gtgtaatgtg ttttaaataa 
750
ttaattagta tatgttgtag aacagtggac aatacttagc aaaccatgta 
800
ataaataaag aaatagtgat aatttgtgtt ttattcagaa atacccgtcg 
850
taacatcaaa acattactta taatcttatt atattatctt tgacacacaa 
900
tgacacaaac ctatatttta gtagtcacct tgcaccattc gtattcatta 
950
catgtgcaac cgaccataat ctgttattat tcgagatttt gagtcttcta 
1000
atatattttt ggtaaaagtt acaatttttt ctatacaccc attaacctct 
1050
acttttggga tattgtaact tgtaactaaa atgatgatat aaagtggatt 
1100
ataagcaatg tgataaagaa gatagtggaa tagcgaaatg caactacctt 
1150
ggtacgttag tagttggggc cgacaacaac agttcaagaa tgttcgttaa 
1200
tcgtgttatt gggcttggtt tagggcccat tcggtttctt atcatattga 
1250
tactgtaaag tgtttactat gccactctat agaagctact actctcttta 
1300
acaatttttt ttaatgttaa agtagttgta ggagattttc tcgtatatgt 
1350
tgtgttggcc tctatatcgt atcaaaggtc tctcccaatt gatatttttg 
1400
ttatttctta gatagaattg atatcatgac tcaagtttta attttttcat 
1450
tcactcgaaa aaaaaattga tttgagtcca gaaattcttt tgtttcaaat 
1500
ccaaatggat tttccgaacg acagaaaatg ttgccgatta tacataaata 
1550
atttaagaaa atcatgtaaa tacattaaat ttttttaact gatatgacta 
1600
taaaatcata aaaatgacta gaaaatatac aaataatatg accacgtacc 
1650
atgaatgtgt agctatcgcc ttacgcctaa caccttagtc aaatttgaat 
1700
gcttactgga ctttgttttc tttctttttt gatttgacta taaataatct 
1750
ttttatattt gcctatttcc atataaaaat ttgaatcact aagaattgaa 
1800
attctggagc ttccactgac cgaagggaaa atattgagga atataaatca 
1850
ttttagaaaa cttgtttatt tttatatgaa gtattagtaa ttattcgaat 
1900
aattatatta ttattttttg tgtcaattta tggaaatcat ttagcaactg 
1950
atatcaaaag caattattct tgggttactt ttctgatgtc aatattgaaa 
2000
tcaattaatt tattcatttt cggtacgtgt aagaagttta aagtatttta 
2050
ccacaaaaaa atgaagttta aagtaaagcc aaaagagata caatgtccag 
2100
gtttgaagtt taaaatagag ccaaaaactt tgaacacgtg cgggatatca 
2150
aataatcagt tatgcatagt tttggatggg cttaagaaag aataaataat 
2200
tttgtgtcct actggactca ggatgcatgt gatgatgtgt agtgttctaa 
2250
tagaatttag ttgcgtatcc gttcgaataa ttattttcaa cacctcctac 
2300
ttttgttaca ttgttttaaa tgactattga caaaataaaa gtaaatgtaa 
2350
ataactaaaa cagaaaagat gtgagaaaaa ctaggaaatt cttttttttg 
2400
aagaattatt aaatttgcta gatttggata atcgattcaa catttggaaa 
2450
agaaaaaaaa tatctaagga tggttgaaag atagtttatg atcaaactag 
2500
ccaggatttt agaggggtca tcagttttct gaacatttat atgttgtttt 
2550
ccgataatac tataaatttg atcaactaat tagatgactt aaaataatgt 
2600
aattgggata atgtttaaga aaatattagg taactcatat aatttaagag 
2650
ttataatttg gttataattt gcaccaaatt tgaaatatat ttctactata 
2700
agataactag aaatagtgaa gaaaaaaaca aaggaaacta gaaaaaatga 
2750
aaaaatggca catgaagtat cttttttgtt tgagaaagaa gttgaaagca 
2800
gataaagcca aattatcttc taaacatgag atggctcgaa attatttgtt 
2850
gtttgggatt caagggggca tgtatcttga atccttccaa ccaacaattt 
2900
tctttaacca tgcttttggc caaaagattt tctttaataa taattaataa 
2950
tagcttccta agattatagg ataatgattt gatattttat gtaatcatat 
3000
ttgcaatacc taagcatgaa aatgttttgt tgagttgatc cagcagttat 
3050
tttggaatat ggcttaatca ttttcacatc gatcttgtta tttctgttcg 
3100
tgaaatgtga actttcgcag ttatttgttt tattcataag ttgttttaga 
3150
tcaaataagt ggagtccact tagaaattat aagatgggaa ttttatttgc 
3200
atatcaaaat tatctataaa aattttagtc aactgatttt tagttttcta 
3250
ctaaaatcgc catcttattt tcttctagat tcaatttgat ctgaatgtgg 
3300
catgtaggtt gataaaactt atcaaatagc atcaaatcag tattttctaa 
3350
aactttttac atcatcataa atctttcact tataaaatat aatatcttgg 
3400
gtacaccaaa gtaatcctga tatatactac aaaatataac attttagttg 
3450
ttttcatatg tggttaatct tttttaggtc gtacatgatt cataaacctt 
3500
accgtcataa aaagaaaaat aaattatatt taaactaaga aatgtgatat 
3550
gatgcaaaag tgacaaaatt tcgatgaatc atgtgatgat aatacgaaat 
3600
gatataccta acctacactg ctcattctac atttgaagaa tatataccta 
3650
aatatacata ccaattctgg gataattaca taatatacag tttcatatta 
3700
gtctcacgta attacgattc acgacagtaa gaagattagt ttaaacggta 
3750
caaaacaatt catatattac gaaaacatta aatatcacac gaagagaaga 
3800
aatatgcaaa acgtctttgc tcgaatcttc gacgaagcaa catagttttt 
3850
catttgagtg taacattatt tttcgtaaat tcccatttca cccttttatt 
3900
acatgacatt tgtctttcac tgagacagta aaaactcaag tctaatttgg 
3950
acatttgcat atacatactc atttttttct ctatatatat agaccatgtc 
4000
aatccactaa cgatccctaa ccgaaaacag agtagtcaag aaacagagta 
4050
ttttttctac ATGGATCCAT TTTTAATTCA GTCCCCATTC TCCGGCTTCT 
4100
CACCGGAATA TTCTATCGGA TCTTCTCCAG ATTCTTTCTC ATCCTCTTCT 
4150
TCTAACAATT ACTCTCTTCC CTTCAACGAG AACGACTCAG AGGAAATGTT 
4200
TCTCTACGGT CTAATCGAGC AGTCCACGCA ACAAACCTAT ATTGACTCGG 
4250
ATAGTCAAGA CCTTCCGATC AAATCCGTAA GCTCAAGAAA GTCAGAGAAG 
4300
TCTTACAGAG GCGTAAGACG ACGGCCATGG GGGAAATTCG CGGCGGAGAT 
4350
AAGAGATTCG ACTAGAAACG GTATTAGGGT TTGGCTCGGG ACGTTCGAAA 
4400
GCGCGGAAGA GGCGGCTTTA GCCTACGATC AAGCTGCTTT CTCGATGAGA 
4450
GGGTCCTCGG CGATTCTCAA TTTTTCGGCG GAGAGAGTTC AAGAGTCGCT 
4500
TTCGGAGATT AAATATACCT ACGAGGATGG TTGTTCTCCG GTTGTGGCGT 
4550
TGAAGAGGAA ACACTCGATG AGACGGAGAA TGACCAATAA GAAGACGAAA 
4600
GATAGTGACT TTGATCACCG CTCCGTGAAG TTAGATAATG TAGTTGTCTT 
4650
TGAGGATTTG GGAGAACAGT ACCTTGAGGA GCTTTTGGGG TCTTCTGAAA 
4700
ATAGTGGGAC TTGGTGAaag attaggattt gtattaggga ccttaagttt 
4750
gaagtggttg attaatttta accctaatat gttttttgtt tgcttaaata 
4800
tttgattcta ttgagaaaca tcgaaaacag tttgtatgta tttttgtgat 
4850
acttgacttt atcaatttca agttagtgta aaagtctttg tctcttacta 
4900
ttcaactagt aagaaaactc tcatttttct tatttatcgt aatgaggatt 
4950
gtctttaagc atgtgctatt agagtattca aacatgtttt aagttaacat 
5000
aataattttt ttgcacaaag cctacaaata gtgtaagatg gtcataatca 
5050
attgctcata acaatataca aagacagttc tttttattgt tctgtaatat 
5100
atgagtccat gagtattgag gagcgactct atatagtagt ataatttatt 
5150
tttgttaatc attaattagg agccacctaa atggctaact ataataatgg 
5200
agtataagtt aaagtgtttt aattttgttt caaatagacc acaactgaaa 
5250
aagatggtca ggtagtgtaa tgaaaatctt gacttctttc ggattaggtg 
5300
gcaacttcta gaatttttgt gctattttac atatattttt aattcatgat 
5350
ttaaagtagc tatggatttt cttgtgactt tctaagggaa ttatctaaga 
5400
ataattgaat aaaaaagatt taaatatgca gaaacttgaa cttttttttt 
5450
gcaatgagat gcatctgtaa ctagaacttt tgtccgataa aacgttttag 
5500
gtaaaaaaag tagtcacata atcacattat tgttttggta gttgaggtca 
5550
ccagaacgat ctgtcataac ttttgggttt gcttgcgtat gggtcatgac 
5600
caagtgcatt gtaatcaaaa tttagccggt aaatagtatt atggtaatga 
5650
catattaaat caactcatag atttctttat aatattttaa cctgtaaaat 
5700
ctaatcttaa tattcaatta ttcactaaag acaaacctgt aaacttttga 
5750
atgaactaat gttaattttg attttttttt tatctgatga tttggaataa 
5800
taattaacaa tcctatcaat attccccatc tctagtaata ggaaatagta 
5850
taacaattac tgattataga aaaattctat aaaatgccac acattcaaat 
5900
tttgttgtaa gaaatatcac tattagttta atgttccaaa aataccacca 
5950
aaagttttga tttttcaaaa ataccacaaa caccatactt gattttcaaa 
6000
tgttcaaaat ttttaatttt aaatttaggt taactatttt agataactta 
6050
agtgatattt ttggaatata atggtatttt tggaaaacca aaatttaagt 
6100
gttgtatttt tgagaaaagt ttaaaatact gttaataaaa taatttgcag 
6150
ttataaaatt ctatattaaa tttcagcaac atagtagtat atctttatat 
6200
ataatttcat tttaagataa cataacatct actagtagta aattgccaaa 
6250
ttgatacatg aaacatcata taagcattaa aaaaggtatg caattttatt 
6300
tcagcacgtg tttatttgaa cgtcggcgaa ttgcagaaca aaacagaaaa 
6350
gattatttgt ttttacgatg gtggaccaag tggtcaatat tttgctgggg 
6400
gacatatcaa aaagagcata gatttaaaat aaaataaatt gtatgcaata 
6450
taaaaataga 
6500