fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G28910 AtMYB30, MYB30 myb domain protein 30 (.1)

>AT3G28910.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspI, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NlaIV, NotI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, Taqƒ¿I, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 158
AccII(FnuDII) CG|CG 655, 706
AciI C|CGC 705
AluI AG|CT 112, 592
AvaII G|G[AT]CC 96
BbvCI CC|TCAGC 591
BclI T|GATCA 743, 801, 834
BfaI C|TAG 594
BsaBI GATNN|NNATC 368
BsaJI C|CNNGG 46, 707
BslI CCNNNNN|NNGG 130
BspHI T|CATGA 837
BsrI ACTGGN| 130, 859
BssKI |CCNGG 99, 186
BstF5I GGATGNN| 863, 949
BstNI CC|[AT]GG 99, 186
BstUI CG|CG 655, 706
BstXI CCANNNNN|NTGG 93
BtgI C|CPuPyGG 46, 707
Cac8I GCN|NGC 595
DdeI C|TNAG 138, 162, 251, 502, 590, 606, 793
DpnI GA-CH3|TC 710, 742, 800, 833
DpnII |GATC 710, 742, 800, 833
DrdI GACNNNN|NNGTC 555
EcoRV GAT|ATC 64, 475
Fnu4HI GC|NGC 134, 145, 267, 865
HaeIII GG|CC 6, 42, 183, 446
HinfI G|ANTC 50, 190, 363, 570, 695, 915
Hpy188I TCN|GA 501, 792, 967
HpyCH4III ACN|GT 382, 543
HpyCH4IV A|CGT 554
HpyCH4V TG|CA 143, 268, 523, 769, 866
MboI |GATC 710, 742, 800, 833
MfeI C|AATTG 272
MseI T|TAA 179, 309
MspA1I C[AC]G|C[GT]G 707
MwoI GCNNNNN|NNGC 273, 492
NcoI C|CATGG 46
NheI G|CTAGC 595
NlaIII CATG| 45, 92, 215, 836
NruI TCG|CGA 656
PspGI |CC[AT]GG 99, 186
PstI CTGCA|G 867
SacII CCGC|GG 707
Sau3AI |GATC 710, 742, 800, 833
Sau96I G|GNCC 42, 96
ScrFI CC|NGG 99, 186
SfcI C|TPuPyAG 542, 725, 867
SmlI C|TPyPuAG 441, 639
StuI AGG|CCT 7
StyI C|C[AT][AT]GG 46
TfiI G|A[AT]TC 190, 363, 570, 915
TseI G|C[AT]GC 134, 145, 267, 865
Tsp45I |GT[CG]AC 19, 75, 546
Tsp509I |AATT 104, 203, 271, 422, 660, 959
TspRI NNCA[CG]TGNN| 546


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>AT3G28910.1 length:972
ATGGTGAGGC CTCCTTGTTG TGACAAAGGA GGAGTGAAGA AAGGGCCATG 
50
GACTCCTGAA GAAGATATCA TTTTAGTCAC TTACATCCAA GAACATGGTC 
100
CTGGTAATTG GAGAGCTGTT CCTACCAATA CTGGGCTGCT TAGATGCAGC 
150
AAGAGTTGTA GACTTAGATG GACAAACTAT TTAAGGCCAG GAATCAAAAG 
200
AGGCAATTTC ACAGAACATG AAGAAAAGAT GATTGTTCAT CTCCAAGCCC 
250
TCTTAGGAAA TAGATGGGCT GCAATTGCGT CATATCTTCC ACAAAGGACA 
300
GACAATGACA TTAAGAACTA TTGGAACACT CATTTGAAGA AGAAACTCAA 
350
CAAAGTCAAT CAAGATTCTC ATCAAGAACT TGACCGTTCC TCGCTCTCAT 
400
CTTCACCATC GTCTTCTTCT GCTAATTCCA ACTCAAACAT CTCAAGAGGC 
450
CAATGGGAAA GGCGACTTCA AACCGATATC CACTTGGCGA AAAAGGCTCT 
500
CTCTGAGGCT TTATCTCCTG CCGTTGCACC AATCATTACA TCTACAGTGA 
550
CAACAACGTC TTCCTCTGCT GAATCAAGAC GCTCTACTTC CTCAGCTAGC 
600
GGGTTTCTTA GGACGCAAGA AACATCTACA ACTTATGCCT CAAGCACCGA 
650
AAATATCGCG AAATTGCTCA AAGGGTGGGT GAAAAACTCG CCGAAGACTC 
700
AAAACTCCGC GGATCAAATC GCTTCTACAG AGGTAAAAGA AGTGATCAAG 
750
AGTGATGATG GGAAGGAGTG TGCAGGGGCA TTTCAGTCAT TTTCTGAGTT 
800
TGATCACTCA TATCAACAGG CTGGTGTTTC ACCTGATCAT GAGACCAAAC 
850
CAGACATAAC TGGATGCTGC AGTAACCAAA GTCAATGGTC TTTGTTTGAG 
900
AAGTGGTTGT TTGAGGATTC TGGTGGACAG ATTGGTGATA TTCTATTGGA 
950
TGAAAACACT AATTTCTTCT GA
1000

>AT3G28910.1 longest ORF length:323
MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS 
50
KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT 
100
DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG 
150
QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS 
200
GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK 
250
SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE 
300
KWLFEDSGGQ IGDILLDENT NFF
350