fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G50260 DEAR1, CEJ1, ATERF#011 DREB AND EAR MOTIF PROTEIN 1, cooperatively regulated by ethylene and jasmonate 1 (.1)

>AT3G50260.1 genomic map

>>Show CDS map




Uncut enzymes: AatII, Acc65I, AfeI, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsmAI, BsmBI, BsmFI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrI, BssHII, BstAPI, BstF5I, BstNI, BstXI, Bsu36I, BtrI, Cfr10I, EagI, EarI, EciI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MlyI, MnlI, MscI, NaeI, , NarI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PflFI, PleI, PmeI, PmlI, PshAI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SphI, StuI, Tth111I, XbaI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 2673, 3419
AccII(FnuDII) CG|CG 2668, 3234, 3379, 3389, 4278, 4463, 4621, 5575
AccIII(BspMII) T|CCGGA 1042
AciI C|CGC 2367, 3233, 3378, 3388, 3510, 4104, 4359, 4459, 5745, 6260
AclI AA|CGTT 2157, 2270, 3051
AflII C|TTAAG 52
AflIII A|CPuPyGT 390, 2562, 2669
AhdI GACNNN|NNGTC 2615
AluI AG|CT 368, 646, 2473, 3248, 4132, 4341, 4411, 4506, 4611, 4837, 5139, 5762, 6094
AlwNI CAGNNN|CTG 5835
ApoI Pu|AATTPy 262, 467, 486, 496, 564, 672, 680, 889, 1091, 1483, 1706, 1749, 1791, 1830, 1888, 2105, 2980, 3370, 3913, 3959, 4695, 5072, 5122
AseI AT|TAAT 535, 3121, 3547, 4752, 4796
AvaI C|PyCGPuG 5379
AvaII G|G[AT]CC 1039, 4314, 4920, 5893
BamHI G|GATCC 3180
BanII GPuGCPy|C 4412
BclI T|GATCA 4028
BfaI C|TAG 591, 644, 732, 1476, 2205, 3246, 4839, 5040, 5652, 6131, 6227
BglII A|GATCT 1568, 5561, 6087
BsaAI PyAC|GTPu 2500, 2541, 2555, 2563, 2676, 2733, 4653
BsaBI GATNN|NNATC 5513
BsaHI GPu|CGPyC 4114
BsaJI C|CNNGG 460, 1689, 3380, 3987, 4109, 4364, 5555, 6317
BsaWI [AT]|CCGG[AT] 601, 623, 1042
BsiHKAI G[AT]GC[AT]|C 4412
BsiWI C|GTACG 4619
BslI CCNNNNN|NNGG 4076, 4173, 5478, 5576, 5852
BsmI GAATGCN| 4628
BsoBI C|PyCGPuG 5379
Bsp1286I G[GAT]GC[CAT]|C 4412, 5291, 6037
BspDI AT|CGAT 1246, 5968
BspEI T|CCGGA 1042
BspHI T|CATGA 474
BsrGI T|GTACA 2146, 4722, 5102
BssKI |CCNGG 2407, 4337, 4535
BssSI C|TCGTG 2374
BstBI TT|CGAA 676, 3809, 3936
BstEII G|GTNACC 6009
BstUI CG|CG 2668, 3234, 3379, 3389, 4278, 4463, 4621, 5575
BstYI Pu|GATCPy 1568, 3180, 5426, 5561, 6087
BstZ17I GTA|TAC 2673, 3419
BtgI C|CPuPyGG 3380, 4109, 6317
BtsI GCAGTGNN| 5288
Cac8I GCN|NGC 645, 4281
ClaI AT|CGAT 1246, 5968
DdeI C|TNAG 30, 1668, 3029, 4308, 5034, 5142, 5422, 5448, 5504
DpnI GA-CH3|TC 33, 1243, 1567, 1572, 3179, 4027, 4177, 4384, 4821, 4935, 5087, 5425, 5444, 5560, 5965, 6086, 6174
DpnII |GATC 33, 1243, 1567, 1572, 3179, 4027, 4177, 4384, 4821, 4935, 5087, 5425, 5444, 5560, 5965, 6086, 6174
DraI TTT|AAA 240, 307, 684, 1094, 1729, 1843, 2771, 2983, 3408, 3588, 5010, 5226
DraIII CACNNN|GTG 836, 5851
DrdI GACNNNN|NNGTC 4144, 4297
EaeI Py|GGCCPu 750, 5392
EcoNI CCTNN|NNNAGG 5478
EcoO109I PuG|GNCCPy 4921
EcoRI G|AATTC 5072
Fnu4HI GC|NGC 2367, 3905, 4104, 4272, 4377, 4459, 4492, 5404
HaeII PuGCGC|Py 5650
HaeIII GG|CC 749, 1910, 1963, 5391
HhaI GCG|C 4277, 5649
HinP1I G|CGC 4277, 5649
HincII GTPy|PuAC 218, 895, 963, 1227, 2273, 2303, 4513
HindIII A|AGCTT 2474
HinfI G|ANTC 277, 2416, 2615, 3126, 4019, 4090, 4214, 4668, 5502, 5538, 5600
HpaI GTT|AAC 218, 895, 963, 2273, 2303
HpaII C|CGG 600, 622, 1041, 2407, 4116, 4337, 4535
Hpy188I TCN|GA 618, 1570, 1836, 1975, 2387, 2918, 3020, 3030, 4077, 4099, 4180, 4309, 5065, 5505, 5994, 6084, 6184
Hpy99I CG[AT]CG| 1259, 1291, 4399, 4435, 5750
HpyCH4III ACN|GT 445, 803, 841, 1134, 1179, 2097, 2216, 2582, 4437, 4719, 5616, 5635, 5860, 6190, 6315
HpyCH4IV A|CGT 553, 2156, 2269, 2391, 2499, 2540, 2554, 2562, 2675, 2699, 2732, 2874, 3050, 3260, 3350, 3491, 4137, 4652
HpyCH4V TG|CA 122, 343, 997, 2088, 2114, 3432, 3906, 3980, 4282, 4443, 6221
MboI |GATC 33, 1243, 1567, 1572, 3179, 4027, 4177, 4384, 4821, 4935, 5087, 5425, 5444, 5560, 5965, 6086, 6174
MfeI C|AATTG 3477, 4884
MluI A|CGCGT 2669
MseI T|TAA 51, 64, 93, 194, 217, 239, 306, 315, 330, 491, 534, 606, 633, 683, 861, 894, 902, 906, 962, 1093, 1137, 1339, 1640, 1672, 1680, 1728, 1757, 1778, 1800, 1805, 1842, 1851, 1942, 2039, 2159, 2272, 2302, 2770, 2982, 2987, 3091, 3120, 3286, 3356, 3373, 3407, 3484, 3546, 3552, 3587, 3613, 3718, 3760, 3775, 3788, 3803, 3843, 4690, 4697, 4732, 4751, 4795, 4811, 4843, 4850, 5009, 5049, 5125, 5225
MslI CAPyNN|NNPuTG 763, 4895, 6168, 6194
MspA1I C[AC]G|C[GT]G 3380, 4376
MspI C|CGG 600, 622, 1041, 2407, 4116, 4337, 4535
MwoI GCNNNNN|NNGC 1269, 4113, 4131, 4281, 4431, 6159
N.BstNBI GAGTCNNNN|N 2620, 4024
NciI CC|[CG]GG 2407, 4337, 4535
NcoI C|CATGG 4109
NdeI CA|TATG 6166
NheI G|CTAGC 645
NlaIII CATG| 120, 389, 473, 763, 937, 2248, 2611, 2691, 2751, 3326, 3668, 3945, 4108, 4952, 5274, 5848, 5869, 5916, 5981
NlaIV GGN|NCC 11, 3180, 4920, 5954
NspI PuCATG|Py 390, 5275
PacI TTAAT|TAA 906
PaeR7I C|TCGAG 5379
PciI A|CATGT 390
PflMI CCANNNN|NTGG 5852
PpuMI PuG|G[AT]CCPy 4921
PsiI TTA|TAA 137, 351, 976, 1633, 2348, 3097, 3159, 3649
RsaI GT|AC 1193, 2145, 2287, 3383, 4353, 4618, 4721, 5101, 5734
SacI GAGCT|C 4412
SacII CCGC|GG 3380
Sau3AI |GATC 33, 1243, 1567, 1572, 3179, 4027, 4177, 4384, 4821, 4935, 5087, 5425, 5444, 5560, 5965, 6086, 6174
Sau96I G|GNCC 1039, 1911, 4314, 4920, 5893
ScaI AGT|ACT 2288, 5735
ScrFI CC|NGG 2407, 4337, 4535
SfcI C|TPuPyAG 3310, 4609
SmlI C|TPyPuAG 52, 223, 1773, 4415, 4872, 5379, 5959, 6240, 6265
SnaBI TAC|GTA 2541, 2555, 2676, 2733
SpeI A|CTAGT 6228
SspI AAT|ATT 313, 381, 511, 1364, 3174, 3455, 3592, 3723, 3800, 4785, 4815, 5222, 6079
StyI C|C[AT][AT]GG 460, 1689, 4109, 5555
SwaI ATTT|AAAT 1095, 2984, 5227
Taqƒ¿I T|CGA 675, 956, 1245, 2715, 2741, 3808, 3935, 4216, 4545, 4819, 5378, 5416, 5463, 5527, 5883, 5967
TfiI G|A[AT]TC 277, 2416, 3126, 4214, 4668, 5600
TliI C|TCGAG 5379
TseI G|C[AT]GC 3905, 5404
Tsp45I |GT[CG]AC 551, 838, 1057, 1131, 4483, 4944, 6008, 6127
Tsp509I |AATT 69, 95, 192, 249, 261, 327, 332, 354, 397, 408, 466, 485, 495, 563, 630, 635, 671, 679, 850, 888, 904, 1090, 1337, 1396, 1407, 1482, 1705, 1742, 1748, 1759, 1790, 1803, 1829, 1849, 1887, 2034, 2066, 2091, 2104, 2134, 2162, 2341, 2573, 2979, 2985, 2993, 3093, 3191, 3264, 3293, 3369, 3398, 3436, 3476, 3578, 3600, 3611, 3651, 3656, 3695, 3805, 3825, 3912, 3932, 3958, 4043, 4058, 4694, 4734, 4883, 5071, 5081, 5121, 5243, 5460, 5924
TspRI NNCA[CG]TGNN| 791, 1057, 3854, 5288, 6193
XcmI CCANNNNN|NNNNTGG 6317
XhoI C|TCGAG 5379
XmnI GAANN|NNTTC 4910, 5737


Click here to view TAIR data

>AT3G50260 genomic sequence (4111-4572,) length:6322
catcttcgct ggaaccacca ccaccaccac cttagatcat tttacctacc 
50
ccttaagtta cttacttaat aattacatat atagtgctat attcttaatt 
100
tttctctcaa aaagtattat tcatgcaaat cacccattat aaaatcaaaa 
150
aagaaatcgt ggataaaaaa gaaaaccaaa acctatatta cataattaaa 
200
acaaaaacga aaatccagtt aacttgagaa caaacttttt ttaaaataat 
250
aattttgaac aaaatttaga taaagaagaa tcttcttcac atatttcgtt 
300
tttgatttta aaaatattaa agaaaaacaa tttaattttg atattgcata 
350
ttataaattg acttgtttta gcttaccaat aatattttga catgtatcaa 
400
ttcacaaata attgatttga tggtaggaat agaagaagaa aaaaaacggt 
450
tatgaaaacc cttggagaat ttatcatgac taataaaatt cattaaaatt 
500
caaatatgac aatattatgt aaaaatctgc cgacattaat aaaagtctgt 
550
cgtgacgtta tgaaaatttc tttttcaaaa aaaaaaaaaa atctagtcaa 
600
accggattta acatacaatc agaccggaaa taatttaatt gagggctagc 
650
taataaatct catataacaa aaaatttcga aattttaaaa ataaatctgt 
700
caaaaaaagt ctgttattac taaaaaagtt attctagtca taaacaaatc 
750
ggccataaca ttgacatgag taaatctgtt atgctttgac actgaaaaac 
800
aaaactgtca tcactaaaaa caaatctgtt atcactatgt gactgtgtag 
850
taattttatt ttttaacaaa aatctgttgt aaaacaccaa atttgttaac 
900
aagttaatta aatctgtgat tacacaaaac aactttgtca tgcctatata 
950
acatttttcg aggttaacaa atctgttata acacaacaga tttttgggtg 
1000
caaatagaaa atctgttgcc accataaaga aaaatctgtg gtccggaaaa 
1050
caaatcagtg acagatttgg tttcaacatt cttacttttg aaatttaaat 
1100
aaaatctgtg gagactatat gaaacaaatc agtcacggtt aaaaaatctg 
1150
cgaaaaaaaa aaatctggcg taacataaca cagtaaagtc tgtggtacaa 
1200
aacaagtctg ttgtaaaaaa tctgtggttg accaacaaat ctgtgatcga 
1250
taacaaatcc gtcgcaacaa gagccacaga tttaccaaaa acgacgatgg 
1300
cattttcgta aataaatgtg gttttattgc cttgctggaa ttaaatagta 
1350
atggcatttc tgtaatattg tttttctctg taaaggaaaa caaggataat 
1400
ttaggtataa ttattactca aataactcat atttttagca ttccttttgg 
1450
gtcattatgt ataaaatatg ggttactcta gtaaatttcc cttttattta 
1500
tcccctcgct aaaaccattt ccaatggttg tttttattta ttcttgtaaa 
1550
tatagaagaa aaaatagaga tctgatctct attttagaaa taaaaataga 
1600
gatgggttag agtgaaatag atgaaaaata gattataaag attaaaaaaa 
1650
agatgagttg gagatgccct aagttaaact tttaactacc aaggctacca 
1700
taggtgaatt ttagccgaag aatatccatt taaaaaaaag tagaattgaa 
1750
attttatttt aattggaagt tccttgaggt taaagaaata aaattcctcc 
1800
gttaaattaa atagaaaata tagaaaatca aatttctctg attttaaaaa 
1850
aattaaaaaa aaacaaaaaa aatcaaaaac aaccctgaaa ttttgaaaag 
1900
cccagcataa aggcccagta taaacaaacg aagacccaaa tctttaacaa 
1950
agggcaaacg agacggcctc ccatatcgga aaaaaaaatc atattgtata 
2000
tagaataaag caaatcaaca gagttagata taaacaattt ttaatctttc 
2050
tccagcctct acttttcaat ttgtctccct ctaaatctat gcaatttacg 
2100
gtcaaaattt gagagtgcaa caaaacaaaa agagtaattt tttcttgtac 
2150
acaaataacg ttaaattgtt cggttaggtt tctggttttt gagtttttct 
2200
attcatctag tcatccaccg tcaaaataaa aaacggcgac aaaacagagc 
2250
atgagcatct tttcctgtaa acgttaacca aacaagtagt actactacta 
2300
ttgttaacac gacaaaaaca caaccattgg tcaatccttt gtaattatta 
2350
taacataatg gaaatgagcc gccctcgtgt ataataatcc gaacgtaaca 
2400
cacaagtccc ggaatggaat ccacaacaat aaaaggcaat accgaaacta 
2450
cccttgatat tatctttgta gagaagcttc caaagatgga caaaaggttt 
2500
acgtgaatag tagagaggga caagttgggc aatatgggaa tacgtatcat 
2550
catttacgta aacacgtaaa agtcaattag taacggtatc cagccaccga 
2600
ctacataccg accatgagtc ccattatatg tcctcaatcc tcatcaatct 
2650
ccttgtttat atatatagac gcgtatacgt aggcatatat gtcatgtaat 
2700
acgttataca catctatcga ataaacatat tatacgtaaa aatcgaccat 
2750
tccatgtttt ttggttatag tttaaataaa aacataactt ttatgatgtt 
2800
atcgtttact cacaaacaaa caaaatcaaa ctctcaataa tacgatgatt 
2850
attccatcat tatacaaagt catatacgtt atcttgttat attttgattt 
2900
gctcttcatt ggtaaatatc tgaaaaaaat atcgggtgaa taaactatat 
2950
tatttttatt atcattttat tattcaaata aatttaaatt aactaattag 
3000
attatgtcaa aatatgtttg tcagaatatc tcagaggttt taggcagaga 
3050
aacgttctct ttttccttcc ttttctattt tttattatta ttttaattat 
3100
aaaaaacaat gagagatacc attaatgaat ccaaaaaaaa atctatctat 
3150
atatgtattt ataaatactt gaaaatattg gatcctatat tcaattatat 
3200
tgttctaaaa aaggacgagt atggtatctc cactccgcga cttttctcta 
3250
gcttatcaca aacgtaattt tctcatcctc tatatcttta acccaatttt 
3300
agttttatac tatagtctat atagtttcat gtttttttta tatatagttt 
3350
cacgttttta ataataacta aattttaatc cgcggtacac cgcgagaaca 
3400
atttattttt aaaagttagt atacataaaa gtttgcaaat tgtatctatc 
3450
tataaatatt tttattttat agtttacaat tgttattaag taacgtcctg 
3500
ccaaacccgt cccgccaacc cgtcccataa aaaaatcatt tattttatta 
3550
atgttaatct tatttatgat atgtttatga attattgttt aaatattttg 
3600
taattttgta ataattaaat gttatcaaat atctctgcgg tttgatgatt 
3650
ataattgaat tgttatagtc atggagaaaa atatatcaaa aatgataatt 
3700
ttgtagtaaa taaatgatat taaatatttt ggaagtttta ttttagtaac 
3750
taatcgtgta gttaatgtgg agagatttaa ggaagattgt taaatgtcaa 
3800
atatttaatt cgaagatttt ttttctaatt atcaaaaaca aacattaaaa 
3850
tccagtgata gttattgtaa ataagtccta actatatgat ttatttcaca 
3900
aaatggctgc aaaaatttca agtttccaac tataattcga agtcggcatg 
3950
gacttttgga attttctcct ctacctacaa ctgcaacctc ggtctctttc 
4000
tctcttcaca tatataagag agtcccttga tcaagaaacc agataatttc 
4050
cccaaacaca attctaaagt cctcctctcg gaaagtaaga gactcaactt 
4100
ccgagccgcc ATGGACGCCG GAGTAGCAGT AAAAGCTGAC GTGGCAGTCA 
4150
AAATGAAGAG AGAAAGACCA TTCAAAGGGA TCAGAATGAG AAAATGGGGG 
4200
AAATGGGTTG CGGAGATTCG AGAACCCAAC AAGCGTTCAA GACTTTGGCT 
4250
CGGCTCTTAC TCTACTCCCG AAGCGGCGGC GCGTGCATAC GACACGGCTG 
4300
TCTTTTACCT CAGAGGACCA ACTGCTACGC TCAACTTCCC GGAGCTTCTG 
4350
CCGTGTACCT CCGCCGAGGA TATGTCAGCG GCAACGATCA GGAAAAAGGC 
4400
GACGGAGGTG GGAGCTCAAG TAGATGCGAT AGGGGCGACG GTGGTGCAGA 
4450
ACAACAAACG CCGCCGCGTT TTTAGTCAAA AGCGTGACTT TGGCGGCGGG 
4500
TTATTAGAGC TTGTTGACTT GAACAAGTTA CCTGACCCGG AAAATCTCGA 
4550
TGATGATTTG GTGGGAAAAT AGactgaaaa ataataataa aatatcttac 
4600
aatggtggct gtagctatcg tacgcggaat gcttgggctt gtgttatatg 
4650
actacgtggt tacggaaaga ttcctctgtt tcgtcattgt attaaaattt 
4700
aatcccacaa gtcaaacata ctgtacatta ttcttaattt agtattttct 
4750
tattaatatc tatcatttgt ttggtgaaca ccagaatatt agactattaa 
4800
tgtaacgagt ttttaatatt tcgatcataa taacaccaag ctagttaaag 
4850
gttaatatct tgttacgaag tcttgagtaa gttcaattgt catatatatg 
4900
taacggaaga ggttcgttcg ggtcccaagt gaagtggatc aaaggtgact 
4950
tcacatgaga acaccaaaaa tggcaggagg agaggtagtt ttagtttgat 
5000
atttttttct ttaaagattt ttgaaatctt gttccttagt cctagttatt 
5050
ttaacgagaa gcctctccga tgaattcata gtaattttga tcgtgagttt 
5100
ttgtacatat atattcatag taaattttaa tgtatttaga agctaagttt 
5150
ttttttatca ttacgatatt acgaaatata tgtcgtaaag tgatagattg 
5200
acaatgaaag aatgaagaca aaatatttaa atccttacgg acataattgg 
5250
ataggatttt ccttctgctt tttggcatgt ggtgggcagt gggcactact 
5300
attttagatt ggtcgttttt ccttcacaac ttcacttgga acaccaaaaA 
5350
TGGCAGGAGG AGGGGTAGTT TTAGTCTCCT CGAGCATTGT TCGGCCAGTA 
5400
AACAGCAGCC AATCTGGTCG AACTAAGATC CATCTTACTC CATTTGATCT 
5450
AAGTCTTCTT CAATTCGATT ATCCTCAAAG AGGTCTTCTC TTCTCCAAAC 
5500
CCGACTCAGA TTTCCATCTC ATCATCTCTC GACTAAAAGA CTCTCTCTCA 
5550
CTCGCCTTGG AGATCTACTT CCCTTTCGCG GGTCGTCTCG TCAAAACAGA 
5600
GAATCTTGAA GACGATACGG TGTCATTTTT CATAGACTGT GATGGCTCTG 
5650
GCGCTAGATT TCTCCACACC GAAGCAAAAT CTGTCTCCGT GAGTGATATT 
5700
CTTCAGCCTG ATGGTTCTGT TCCTGATTTC TTGAAGTACT TCTTTCCCGC 
5750
CGACGATTTC AAGAGCTGTG ATGGTGTCTC GTTGCCCTTG CTTGTTATAC 
5800
AAGTTACCGA GATGAAGGAC GGAGTTTTCA TCAGTTTCTG TTACAACCAC 
5850
ATGGTGGCAG ACGGTGTTTC CATGTGGAGT TTTTTCGATA CTTGGTCCAA 
5900
GATTTGCTCA ACAGGTTCAT GTTTCAATTA CAAGCCTCTT GTTCTCAAAG 
5950
GGTGGTTCCT TGAGGGGATC GATTACCCAA TCCATGTTCC AGTTTCAGAG 
6000
GCAGAGAGGT CACCACCAAG CCGTGAACCT TCTTCCGTGC CCATTACGAA 
6050
AGAATGGATT TTTCACTTCA CAAAGAAGAA TATTTCAGAT CTCAAAGCTA 
6100
AAGCCAACAG CGAGATTGCC TCCAGTAGTG ACCTAGAAGT TTCATCTCTT 
6150
CAAGCGGTTT CGGCACATAT GTGGCGATCA ATCATCAGAC ACAGTGGTGT 
6200
GAGCCGAGAA CAAAAGACAC ATTGCAGACT AGTGGTGGAC TTGAGGCAAA 
6250
GAGTAAATCC ACCGCTTGAG AAAGATTGTT TTGGGAATAT GGTCTATCTT 
6300
TCATCAGCCA TAACCACCGT GG
6350