fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G50890 ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1)

>AT3G50890.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 72
NcoI C|CATGG 110
PvuII CAG|CTG 361
SalI G|TCGAC 160
StyI C|C[AT][AT]GG 110, 165


Click here to view TAIR data

>AT3G50890.1 length:750
ATGGAGCTTG GAGGAAAATG CAATGCAATT ACAACCACAA CAATGATCTC 
50
AACAGAAGTA AAGCCACATA CGGATCCGGA ACCAGAAGCC AAACCCGAAT 
100
CAGATCCATC CATGGCTTTA TTCCCGATCA AGAAAGAAAA CCAAAAACCA 
150
AAGACACGTG TCGACCAAGG AGCTAAGTAC CGGGAATGTC AGAAGAACCA 
200
CGCGGCCTCA ACCGGAGGAC ACGTGGTGGA CGGATGCTGC GAGTTCATGG 
250
CCGGCGGAGA AGAAGGTACA CTCGGTGCTT TAAAATGCGC CGCCTGTAAC 
300
TGTCACCGGA GCTTCCACCG GAAAGAAGTG TACGGACACA GGAACAGTAA 
350
ACAAGATCAT CAGCTGATGA TAACTCCGGC GTTTTACAGC AGTAACAGCT 
400
CGTACAAGCC ACGTGTAATG CATCCAACGG GTGAGATTGG ACGGAGGACT 
450
TCATCTTCAA GCGAGGATAT GAAGAAGATT CTGAGTCATC GTAACCAAAA 
500
CGTTGATGGG AAAAGTTTGA TGATGATGAT GATGAGGAAG AAGAAGAGAG 
550
TGAGGACAAA GATCAATGAA GAACAAAAGG AGAAGATGAA GGAATTTGCA 
600
GAGAGATTAG GGTGGAGGAT GCAGAAGAAA GATGAAGAAG AGATTGATAA 
650
GTTTTGTAGG ATGGTGAATC TGAGGAGACA AGTTTTTAAG GTTTGGATGC 
700
ATAATAACAA GCAAGCAATG AAGAGAAACA ATAGTAACAT TAGTGAATAG 
750

>AT3G50890.1 longest ORF length:249
MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP 
50
KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN 
100
CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT 
150
SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA 
200
ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE
250