fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G50890 ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1)

>AT3G50890.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, EcoRI, KpnI, NheI, NotI, PacI, PstI, SacI, SmaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 4325, 6261
BglII A|GATCT 2008, 2035, 5507, 5776, 5817
EcoRV GAT|ATC 1553, 6612
HindIII A|AGCTT 2495, 2587, 3288
HpaI GTT|AAC 1921, 3358, 5301
NcoI C|CATGG 4363, 5985
NdeI CA|TATG 1958, 3879
PvuII CAG|CTG 3097, 4614
SalI G|TCGAC 1163, 4413
SpeI A|CTAGT 1087
StyI C|C[AT][AT]GG 4363, 4418, 5985
XbaI T|CTAGA 1448, 2369, 5499


Click here to view TAIR data

>AT3G50890 genomic sequence (4254-5003,) length:6662
ATGGTACTCC GTGGGCTCAT CACCACTCGA CGCAGAGGGT TCCGTGTAAT 
50
TATCCGGCAA ATGAGATCAG GTTCATGGAT GATTACGGCA GTGGAGTAGC 
100
AAACAACGTT GAATCCGACG GTGCTCACGG CGGTGTTCCG TTCCTTTCTT 
150
GGAGGCTTAA TGTAGCGGAT AGGGCAAGTC TTGTCCATGA CTTTACCAGA 
200
TGAaaggaga atagaaaacg acgttagatt ctcttaaaat ttccatgtgg 
250
tttaattatg tctaattaaa aaaaaaccaa gaaaatattt ctgaaaaaaa 
300
tagaagtgta tatcgagaga cgatgttgat gtttattgat agtgacggtc 
350
taacttatgg tttatctata aagtaccgtt ctggtcaatt tttaaaatca 
400
ttttctaata tttattttaa aaatataacc ttctttttat ggaaatcttc 
450
tcttctctag tctataaaat aaacactata gttagattct tctattgatt 
500
acacagtgat cgtcataaaa cattacagat gtaatcaaaa cattagaaag 
550
aaaaacaaaa aatgaaagat gtgcataaga gaaaacacac agaccaaaaa 
600
tatagacata ggatataact cttttaatgt atatagttta gagttgaacg 
650
gagaagtttc agttccacct gagtccctga atttcacaac tgagacttta 
700
ataataataa tattcttact attggttaat aaaaaataga gaaaataaaa 
750
taaaaattag ggtgtttggt agtgaagatt gaaatctgat cgtcgaattg 
800
gggagagatt agattctgat cgtaccaatg tgggttttgg tactgttgtg 
850
ttttcagttt tggatcagag agcattgtag tgatttaatg aacatatatt 
900
tgtcgtatta tgctctgctt cttcctcctt tatattttga ccgtcgtttt 
950
gtcctttact cactcctctc ttcttgacct tttgttcgtg tcaatatgtg 
1000
ctctcaagaa tattgttttt cttccttttt aattacttac tttttccgat 
1050
tttttattac tgaaccgatt ctgcaacatg ttttgtacta gtaaccagct 
1100
ttttaatcca tctctctctg cacgatcata taaaatatac gttatttttt 
1150
ttcaattcag gcgtcgacaa agaaataact gttttgttgt acttaacatg 
1200
ttggatcata ttttttttac tgtaacaggg cttttattat gggcttatcg 
1250
attttcatta aggcccaatg aagaatatcg tcgcgagtga taaaatttcg 
1300
aatttctgca attactaaca attaacaaac tcggccgtcg tcATGTCTCT 
1350
CCGTAAAACC CTAACCGCCG TGAATCAATC TTCGTTACCG CCGGATTCTT 
1400
TAATCTCCGC CGGTAATCTC ACTGTTTCAG AGGTCTCTGG TTCATCTTCT 
1450
AGAATCAGAT TTCGTCCTCG TAAAATCAGG AAAGTTTCGT CAGATCCGTC 
1500
GCCGAGGATC ATTATCACCG CGTCTCCTCC TCTATCAACA AAATCGACTG 
1550
TTGATATCGC TCTACGTCAC TTACAAAGCT CCGATGAACT TCTCGGAGCA 
1600
TTAATCACAA CGCACAACGA TCCTCCACTG TTCGACTCAA GTAATACTCC 
1650
GTTTCTCTCC TTAGCGAGAT CAATCCTATA CCAACAACTC GCGACGAAAG 
1700
CAGCGAAATG TATCTACGAT CGATTCATCT CTCTATTCAA CGGTGGAGAA 
1750
GCAGGTGTTG TTCCTGAATC TGTGATCTCA CTCTCCGCCG TTGATCTTCG 
1800
TAAGATCGGT GTCTCCGGGA GAAAAGCTAG TTACCTCCAC GATCTAGCTG 
1850
ATAAATACAA CAACGGTGTG CTTTCTGATG AATTGATTCT GAAAATGAGT 
1900
GATGAAGAGT TGATTGATAG GTTAACTTTG GTTAAAGGAA TTGGAGTGTG 
1950
GACTGTTCAT ATGTTTATGA TCTTCTCGTT GCATAGACCT GATGTGTTGC 
2000
CTGTGGGAGA TCTTGGTGTG AGGAAAGGTG TGAAAGATCT TTATGGTTTG 
2050
AAAAATCTTC CAGGTCCATT GCAAATGGAG CAGCTTTGTG AGAAATGGCG 
2100
TCCTTATAGG TCTGTTGGTT CATGGTACAT GTGGAGACTA ATCGAGTCTC 
2150
GTAAGACCAA ATAGcacctg cctggtaata gtttaacaat acctctcttt 
2200
ttaggttgat agtaactaga attgttatgt tacatagaca aacttgattc 
2250
tttatagaat atttcatgct tgacttggaa atttgaacag ttacatgatt 
2300
agaaaggata ggagtataac atttgtttga cattaagttc tctggattgg 
2350
tttttgtttg gaatgctttc tagaagtaga aatctcccaa atcttaaaac 
2400
aagaatcata aagtatttat cttttcttga tgtatcttgt ttatctagca 
2450
atagtatcaa tcctagtaag taacatgacg atactttatc actgaagctt 
2500
ctatatctgg tagttatcgt tgaagtgtga tttgttgcaa tcaatcattt 
2550
cagtaatcgg gcagttaata tgatcctgtg acgaagaagc ttttccatgc 
2600
ccatcacttc ctttccaagt ttcacttgct ggtaatctga gttattttgt 
2650
gtctgtaaat tatggagcac gtaagaaaaa tccttcttgt attttaactg 
2700
tattccacgg attatatttc tgtgactgtt gtaaacatgt atcatgtatg 
2750
gggtttcatt tgacttggat attgagaagc atggcttatt taccaagtct 
2800
tttgtttctg tcttgtactg ggcttggccc aatgtctcat ccggcccaat 
2850
tgatcaagtg gtagatagct tggatctgat tttgccaaga cagatgtgaa 
2900
atcaaccctt gctttctttt aacttaaaat agttatagga agaaattact 
2950
cttattcaga gagacgaatt taaaagtcta agatgtcacg cgtaacattc 
3000
aaacctctta ataaaagttt agtatatggc taatctattc ccgttgattg 
3050
atttcaatat ttggtaagaa atgaagatga tcataaaagt gctacacagc 
3100
tgtgggaaac aaagaatctg aaaaatgaga catgaggcat gtggagataa 
3150
ataaaagtgc aggttttgtt gtgcttatgt ggaccagctt ttcattcttt 
3200
cacactttta attcttcaac cctccccacc agaaaaataa tttatcatgt 
3250
cttctctttc aagactatca ttaaactctg attgttaaag cttatttcat 
3300
taaacaactc tattagaaac cctaattcca tttgtatggg aaattgaagc 
3350
tatagtagtt aacttctaac tccatgcaaa ccataaatac ctctcataat 
3400
gatagtaaga gtattatttt ctcattgatt atcacaataa atctgatcaa 
3450
agaatttgtg gagatcgata aataaagata ctcctactat tattatgaca 
3500
gcataaagga ttgacaaaca ttgttgttcg aagttttaat ctattttatg 
3550
atatgttaga acttaaaatc atagtcctaa aaatttataa ctaacaatac 
3600
ataagacata attttaactt acattagaaa aaagttttga aaactaaccc 
3650
atttaactaa tttaaaataa tcccataact ttcctctcat ttatctctct 
3700
ctctccactc ctcaagtctg tacttagtag gtaatagttt gactaagcta 
3750
ggtttttttg cagacataca ttaattagta acaccatcaa taatcatcat 
3800
aaaagaaaat agagagaaag agagataaat gcaataatgg gagatggacc 
3850
aaaggtgcag gtggtgaaag ataacaaaca tatgacaatg tctcgaaatt 
3900
aagaggcacc accacacata cacacacact ctctctctct agtaggtttg 
3950
tgtttttaaa atcaatattt ttgttggatt ctcatgtgaa ataaaacttg 
4000
atgggtgata ggaaacaaac acacatacgt catcatcatc cttaatttct 
4050
atttctcctt cttcttcatc atcaatatca atctcatctt ccactactcc 
4100
tcccctctaa caataagcag catctctata atccctaagg tgagtccaaa 
4150
agtcgtctat taattattaa aggagagatt tttgcatgca ttattgaatg 
4200
atttataagt attaatattt aacaaagttt tgttgttttg ggtcagattc 
4250
acaATGGAGC TTGGAGGAAA ATGCAATGCA ATTACAACCA CAACAATGAT 
4300
CTCAACAGAA GTAAAGCCAC ATACGGATCC GGAACCAGAA GCCAAACCCG 
4350
AATCAGATCC ATCCATGGCT TTATTCCCGA TCAAGAAAGA AAACCAAAAA 
4400
CCAAAGACAC GTGTCGACCA AGGAGCTAAG TACCGGGAAT GTCAGAAGAA 
4450
CCACGCGGCC TCAACCGGAG GACACGTGGT GGACGGATGC TGCGAGTTCA 
4500
TGGCCGGCGG AGAAGAAGGT ACACTCGGTG CTTTAAAATG CGCCGCCTGT 
4550
AACTGTCACC GGAGCTTCCA CCGGAAAGAA GTGTACGGAC ACAGGAACAG 
4600
TAAACAAGAT CATCAGCTGA TGATAACTCC GGCGTTTTAC AGCAGTAACA 
4650
GCTCGTACAA GCCACGTGTA ATGCATCCAA CGGGTGAGAT TGGACGGAGG 
4700
ACTTCATCTT CAAGCGAGGA TATGAAGAAG ATTCTGAGTC ATCGTAACCA 
4750
AAACGTTGAT GGGAAAAGTT TGATGATGAT GATGATGAGG AAGAAGAAGA 
4800
GAGTGAGGAC AAAGATCAAT GAAGAACAAA AGGAGAAGAT GAAGGAATTT 
4850
GCAGAGAGAT TAGGGTGGAG GATGCAGAAG AAAGATGAAG AAGAGATTGA 
4900
TAAGTTTTGT AGGATGGTGA ATCTGAGGAG ACAAGTTTTT AAGGTTTGGA 
4950
TGCATAATAA CAAGCAAGCA ATGAAGAGAA ACAATAGTAA CATTAGTGAA 
5000
TAGtttgatg atctgataaa agtgaaataa atttttacaa tcctgttttg 
5050
cttttatata taatttttgc ccttcaaatt attcaaaatc ttgagtataa 
5100
atctgtggaa tcttgtatgt tttgattgtt ttatattgta tctgggatta 
5150
tttttttctt ttacttaatt tgtggttgaa caaagtgata aaattggacc 
5200
ttcaaataaa gagggaaaaa cgtgtgtaat taataattta atgcacaagt 
5250
atggttagta caattaGCTG GAATAGCTCA GTTGGTTAGA GCGTGTGGCT 
5300
GTTAACCACA AGGTCGGAGG TTCGACCCCT CCTTCTAGCG ttttttatcc 
5350
ttcaaatggc tgttttaaaa ttctgattca tacttttttt tttctgtctg 
5400
aatagaaagt tgattttgtt tgaaaaatct gattcataat catgtacatg 
5450
catgataaca gtctgatgtt aaaccatcgt aaggagcaga tttagcattc 
5500
tagaatagat ctattctgct tacttttacc ccaaatttag atttttccat 
5550
gattaatata ttgttagata tggatcagac aaagaagatt agtctaaact 
5600
ctaaagccat tgtccatttg atttgtctaa aagatgtaga cgtaatagtc 
5650
agcataaaca cacatttgac cggcgattta atagggacga acaagaagat 
5700
gtatacatca tgtgggtgta acactaacac atgctttatt aattacatat 
5750
acaaaaattt aatttagtta gttggagatc tcatacacac aacaataatt 
5800
aaaataaaag tcaaacagat ctactatttt ccttttcata tcacaaagca 
5850
aacttgtcct actacttaaa tcaacaccat cacgaagaaa gtttcaagaa 
5900
ctcacctaaa acacaaacaa aggaactcca ctttttttcc acaccacatc 
5950
acaccATGTT TAGAGCCATG AGCACAAGGA AAATCCATGG TGGCTACGAA 
6000
AAGCTCGGCG ATGAAGAAGC GAGACTGAAG AGGGTCTCTA GCGTTCCGGC 
6050
TAGTGTTTAT GGTCATTCAA GAAACCCGGT TCAAGAAGTG AAGAAGACAC 
6100
CGACAGCGAA ACCAACCGGT GGTTCTGTTC ATCCTTTGTT TAGTTTCTTT 
6150
GACGTTCATT TTCAAAGAAA GAAGAAGAAT ACGGCGAAGA AGAAGAGTTT 
6200
AGCAACGGCG AAACCAGAGT TTGCTAGGTA TATGGAGTAT GTGAGAGAAG 
6250
GAGGTGTGTG GGATCCGAGT TCTAACGCAC CAGTGATTCA TTACAGATAG 
6300
attcgtcaag gaaaatgaat aaaagatttg tatatcgtct tttttttcca 
6350
aatatataat ctatgagaaa gccaaacaat ccttgattcg attcgaaaag 
6400
atgcatcaaa caatgtatta gtcatttttg cacgaattga tgagtgtttt 
6450
gtacactctc atggagattc cgtgaagaat aagataagtt caagggtctt 
6500
gactttaata tatgatcaaa aagttgattt tggttttctt atttaaaagg 
6550
atatgttata tgaactgaat caattcgtag tagttgctaa tatagaagcg 
6600
gtcccagagc tgatatcttt gaatcatgtt ctatattctt catttcccac 
6650
cttagctttt at
6700