fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G57390 AGL18 AGAMOUS-like 18 (.1.2)

>AT3G57390.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, HaeII, HgaI, HindIII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StyI, SwaI, TliI, TseI, Tth111I, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 687
AflII C|TTAAG 352
AluI AG|CT 99, 283, 333, 363, 419, 611
AlwNI CAGNNN|CTG 177
ApoI Pu|AATTPy 191
AvaI C|PyCGPuG 607
AvaII G|G[AT]CC 555
BanII GPuGCPy|C 612
BclI T|GATCA 83
BfaI C|TAG 198, 588
BsaHI GPu|CGPyC 118
BsaJI C|CNNGG 122
BsiHKAI G[AT]GC[AT]|C 612, 649
BsoBI C|PyCGPuG 607
Bsp1286I G[GAT]GC[CAT]|C 612, 649
BsrFI Pu|CCGGPy 151
BsrI ACTGGN| 729
BssKI |CCNGG 383, 478
BstF5I GGATGNN| 631
BstNI CC|[AT]GG 478
BstYI Pu|GATCPy 387, 475
Cac8I GCN|NGC 336, 422
Cfr10I [AG]|CCGG[TC] 151
DdeI C|TNAG 64, 226
DpnI GA-CH3|TC 82, 386, 437, 474, 602, 721
DpnII |GATC 82, 386, 437, 474, 602, 721
FspI TGC|GCA 521
HaeIII GG|CC 576
HhaI GCG|C 520
HinP1I G|CGC 520
HincII GTPy|PuAC 687
HinfI G|ANTC 107, 303, 585, 749
HpaII C|CGG 150, 383
Hpy188I TCN|GA 621, 657, 762
Hpy99I CG[AT]CG| 685
HpyCH4III ACN|GT 43, 76
HpyCH4V TG|CA 337, 423, 669, 698
MboI |GATC 82, 386, 437, 474, 602, 721
MfeI C|AATTG 341
MseI T|TAA 21, 351
MslI CAPyNN|NNPuTG 278
MspI C|CGG 150, 383
MwoI GCNNNNN|NNGC 126
N.BstNBI GAGTCNNNN|N 754
NciI CC|[CG]GG 383
NlaIII CATG| 272
PspGI |CC[AT]GG 478
SacI GAGCT|C 612
SalI G|TCGAC 687
Sau3AI |GATC 82, 386, 437, 474, 602, 721
Sau96I G|GNCC 555
ScrFI CC|NGG 383, 478
SmlI C|TPyPuAG 352, 581
StuI AGG|CCT 577
Taqƒ¿I T|CGA 104, 686, 723
TfiI G|A[AT]TC 107, 303, 585
Tsp45I |GT[CG]AC 54, 115
Tsp509I |AATT 190, 259, 340
TspRI NNCA[CG]TGNN| 226
XbaI T|CTAGA 199
XcmI CCANNNNN|NNNNTGG 182


Click here to view TAIR data

>AT3G57390.1 length:771
ATGGGGAGAG GAAGGATTGA GATTAAGAAG ATTGAGAATA TCAACAGTCG 
50
TCAAGTCACT TTCTCTAAGA GACGAAACGG TTTGATCAAG AAGGCTAAAG 
100
AGCTTTCGAT TCTCTGTGAC GCCGAGGTTG CTCTTATCAT CTTCTCCAGC 
150
ACCGGCAAGA TTTACGATTT CTCCAGCGTC TGTATGGAGC AAATTCTTTC 
200
TAGATATGGA TACACTACTG CGTCCACTGA GCATAAACAA CAAAGAGAAC 
250
ACCAACTTCT AATTTGTGCT TCACATGGAA ATGAAGCTGT GTTGCGAAAT 
300
GATGATTCTA TGAAGGGGGA ACTTGAAAGA TTACAGCTTG CAATTGAGAG 
350
ACTTAAGGGT AAGGAGCTTG AAGGTATGAG TTTCCCGGAT CTTATTTCTC 
400
TTGAAAACCA GTTGAACGAG AGCTTGCATA GTGTCAAGGA TCAAAAGACA 
450
CAAATCCTGC TCAACCAGAT TGAGAGATCC AGGATACAGG AGAAAAAAGC 
500
ATTGGAAGAA AACCAAATCT TGCGCAAACA GGTTGAGATG TTGGGGAGAG 
550
GTTCAGGACC AAAAGTGTTG AATGAAAGGC CTCAAGATTC TAGCCCAGAA 
600
GCCGATCCCG AGAGCTCTTC ATCAGAAGAG GATGAGAATG ACAACGAGGA 
650
GCACCATTCC GACACTTCCT TGCAGTTGGG GTTGTCGTCG ACGGGGTATT 
700
GCACAAAGAG AAAGAAGCCG AAGATCGAAC TGGTCTGCGA TAACTCTGGG 
750
AGTCAAGTGG CTTCTGATTG A
800

>AT3G57390.1 longest ORF length:256
MGRGRIEIKK IENINSRQVT FSKRRNGLIK KAKELSILCD AEVALIIFSS 
50
TGKIYDFSSV CMEQILSRYG YTTASTEHKQ QREHQLLICA SHGNEAVLRN 
100
DDSMKGELER LQLAIERLKG KELEGMSFPD LISLENQLNE SLHSVKDQKT 
150
QILLNQIERS RIQEKKALEE NQILRKQVEM LGRGSGPKVL NERPQDSSPE 
200
ADPESSSSEE DENDNEEHHS DTSLQLGLSS TGYCTKRKKP KIELVCDNSG 
250
SQVASD
300