Locus |
Common name |
Short description |
AT3G57390 |
AGL18 |
AGAMOUS-like 18 (.1.2) |
>AT3G57390.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, HaeII, HgaI, HindIII, HpaI, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StyI, SwaI, TliI, TseI, Tth111I, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
687 |
AflII
| C|TTAAG |
352 |
AluI
| AG|CT |
99, 283, 333, 363, 419, 611 |
AlwNI
| CAGNNN|CTG |
177 |
ApoI
| Pu|AATTPy |
191 |
AvaI
| C|PyCGPuG |
607 |
AvaII
| G|G[AT]CC |
555 |
BanII
| GPuGCPy|C |
612 |
BclI
| T|GATCA |
83 |
BfaI
| C|TAG |
198, 588 |
BsaHI
| GPu|CGPyC |
118 |
BsaJI
| C|CNNGG |
122 |
BsiHKAI
| G[AT]GC[AT]|C |
612, 649 |
BsoBI
| C|PyCGPuG |
607 |
Bsp1286I
| G[GAT]GC[CAT]|C |
612, 649 |
BsrFI
| Pu|CCGGPy |
151 |
BsrI
| ACTGGN| |
729 |
BssKI
| |CCNGG |
383, 478 |
BstF5I
| GGATGNN| |
631 |
BstNI
| CC|[AT]GG |
478 |
BstYI
| Pu|GATCPy |
387, 475 |
Cac8I
| GCN|NGC |
336, 422 |
Cfr10I
| [AG]|CCGG[TC] |
151 |
DdeI
| C|TNAG |
64, 226 |
DpnI
| GA-CH3|TC |
82, 386, 437, 474, 602, 721 |
DpnII
| |GATC |
82, 386, 437, 474, 602, 721 |
FspI
| TGC|GCA |
521 |
HaeIII
| GG|CC |
576 |
HhaI
| GCG|C |
520 |
HinP1I
| G|CGC |
520 |
HincII
| GTPy|PuAC |
687 |
HinfI
| G|ANTC |
107, 303, 585, 749 |
HpaII
| C|CGG |
150, 383 |
Hpy188I
| TCN|GA |
621, 657, 762 |
Hpy99I
| CG[AT]CG| |
685 |
HpyCH4III
| ACN|GT |
43, 76 |
HpyCH4V
| TG|CA |
337, 423, 669, 698 |
MboI
| |GATC |
82, 386, 437, 474, 602, 721 |
MfeI
| C|AATTG |
341 |
MseI
| T|TAA |
21, 351 |
MslI
| CAPyNN|NNPuTG |
278 |
MspI
| C|CGG |
150, 383 |
MwoI
| GCNNNNN|NNGC |
126 |
N.BstNBI
| GAGTCNNNN|N |
754 |
NciI
| CC|[CG]GG |
383 |
NlaIII
| CATG| |
272 |
PspGI
| |CC[AT]GG |
478 |
SacI
| GAGCT|C |
612 |
SalI
| G|TCGAC |
687 |
Sau3AI
| |GATC |
82, 386, 437, 474, 602, 721 |
Sau96I
| G|GNCC |
555 |
ScrFI
| CC|NGG |
383, 478 |
SmlI
| C|TPyPuAG |
352, 581 |
StuI
| AGG|CCT |
577 |
Taqƒ¿I
| T|CGA |
104, 686, 723 |
TfiI
| G|A[AT]TC |
107, 303, 585 |
Tsp45I
| |GT[CG]AC |
54, 115 |
Tsp509I
| |AATT |
190, 259, 340 |
TspRI
| NNCA[CG]TGNN| |
226 |
XbaI
| T|CTAGA |
199 |
XcmI
| CCANNNNN|NNNNTGG |
182 |
Click here to view TAIR data
>AT3G57390.1 length:771
ATGGGGAGAG GAAGGATTGA GATTAAGAAG ATTGAGAATA TCAACAGTCG | 50 |
TCAAGTCACT TTCTCTAAGA GACGAAACGG TTTGATCAAG AAGGCTAAAG | 100 |
AGCTTTCGAT TCTCTGTGAC GCCGAGGTTG CTCTTATCAT CTTCTCCAGC | 150 |
ACCGGCAAGA TTTACGATTT CTCCAGCGTC TGTATGGAGC AAATTCTTTC | 200 |
TAGATATGGA TACACTACTG CGTCCACTGA GCATAAACAA CAAAGAGAAC | 250 |
ACCAACTTCT AATTTGTGCT TCACATGGAA ATGAAGCTGT GTTGCGAAAT | 300 |
GATGATTCTA TGAAGGGGGA ACTTGAAAGA TTACAGCTTG CAATTGAGAG | 350 |
ACTTAAGGGT AAGGAGCTTG AAGGTATGAG TTTCCCGGAT CTTATTTCTC | 400 |
TTGAAAACCA GTTGAACGAG AGCTTGCATA GTGTCAAGGA TCAAAAGACA | 450 |
CAAATCCTGC TCAACCAGAT TGAGAGATCC AGGATACAGG AGAAAAAAGC | 500 |
ATTGGAAGAA AACCAAATCT TGCGCAAACA GGTTGAGATG TTGGGGAGAG | 550 |
GTTCAGGACC AAAAGTGTTG AATGAAAGGC CTCAAGATTC TAGCCCAGAA | 600 |
GCCGATCCCG AGAGCTCTTC ATCAGAAGAG GATGAGAATG ACAACGAGGA | 650 |
GCACCATTCC GACACTTCCT TGCAGTTGGG GTTGTCGTCG ACGGGGTATT | 700 |
GCACAAAGAG AAAGAAGCCG AAGATCGAAC TGGTCTGCGA TAACTCTGGG | 750 |
AGTCAAGTGG CTTCTGATTG A | 800 |
>AT3G57390.1 longest ORF length:256
MGRGRIEIKK IENINSRQVT FSKRRNGLIK KAKELSILCD AEVALIIFSS | 50 |
TGKIYDFSSV CMEQILSRYG YTTASTEHKQ QREHQLLICA SHGNEAVLRN | 100 |
DDSMKGELER LQLAIERLKG KELEGMSFPD LISLENQLNE SLHSVKDQKT | 150 |
QILLNQIERS RIQEKKALEE NQILRKQVEM LGRGSGPKVL NERPQDSSPE | 200 |
ADPESSSSEE DENDNEEHHS DTSLQLGLSS TGYCTKRKKP KIELVCDNSG | 250 |
SQVASD | 300 |
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