fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G57390 (AGL18)

Alias AGL18
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SEPALLATA1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description AGAMOUS-like 18 (.1.2)
TAIR annotation encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. (.1), encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. (.2)
Gene model
Gene model cDNA support
AT3G57390.1 22
AT3G57390.2 9
Entry clone (w/o stop) RE_1280_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48577: response to abiotic or biotic stimulus ->negative regulation of short-day photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 9555: developmental processes ->pollen development
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes ->flower development
(P) 9910: developmental processes ->negative regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice
sorghum
physcomitrella
Total 2 2
Repression motif 
HHSDTSLQLGLSSTGY at 161/195 in AT3G57390.2
HHSDTSLQLGLSSTGY at 222/256 in AT3G57390.1
Repression motif
in putative orthologs		 
DLSDTSLHLGLSSDVC at 196/228 in poplar Pt005146 (Type Ia)
DLSDTSLQLGLSTDYG at 234/265 in soybean Gm004424 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID Species Construct Date Comment Phenotype Photo
ID547 Torenia 35S:AtCDS-SRDX 2007-07-06 flower bulk, 5 lines  runner-like (2), splashed-pattern petals (3) 
[Publication link]
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