Alias
AGL18
TF Classification
FioreDB MADS (Click to show phylogenetic tree)
RARTF MADS / SEPALLATA1
AtTFDB MADS / TypeII
PlnTFDB MADS (v3.0), MADS (v1.0)
DATF MADS
TAIR short description
AGAMOUS-like 18 (.1.2)
TAIR annotation
encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. (.1), encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. (.2)
Gene model
Entry clone (w/o stop)
RE_1280_x
External link
Gene Ontology (GO)
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(P) 45944: transcription,DNA-dependent
->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding
->protein dimerization activity
(P) 48577: response to abiotic or biotic stimulus
->negative regulation of short-day photoperiodism, flowering
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6351: transcription,DNA-dependent
->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent
->regulation of transcription, DNA-templated
(P) 9555: developmental processes
->pollen development
(F) 977: nucleic acid binding
->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes
->flower development
(P) 9910: developmental processes
->negative regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
rice
sorghum
physcomitrella
Total
2
2
Repression motif
HHSDTSLQLGL SSTGY at 161/195 in AT3G57390.2 HHSDTSLQLGL SSTGY at 222/256 in AT3G57390.1
Repression motif in putative orthologs
DLSDTSLHLGL SSDVC at 196/228 in poplar Pt005146 (Type Ia)
DLSDTSLQLGL STDYG at 234/265 in soybean Gm004424 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
ID
Species
Construct
Date
Comment
Phenotype
Photo
ID547
Torenia
35S:AtCDS-SRDX
2007-07-06
flower bulk, 5 lines 
runner-like (2), splashed-pattern petals (3) [Publication link]
Comment