Locus |
Common name |
Short description |
AT3G61230 |
PLIM2c |
PLIM2c, GATA type zinc finger transcription factor family protein (.1) |
>AT3G61230.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BstBI, BstEII, BstNI, BstYI, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DpnI, DpnII, DraI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, N.BstNBI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsaI, RsrII, SacI, SalI, SapI, Sau3AI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
52 |
AccII(FnuDII)
| CG|CG |
523 |
AciI
| C|CGC |
522 |
AluI
| AG|CT |
192, 235, 322, 480, 619 |
AlwNI
| CAGNNN|CTG |
620 |
ApaLI
| G|TGCAC |
401 |
ApoI
| Pu|AATTPy |
213, 225 |
AvaII
| G|G[AT]CC |
467 |
BfaI
| C|TAG |
347 |
BsaHI
| GPu|CGPyC |
451 |
BsaJI
| C|CNNGG |
155, 524 |
BsiHKAI
| G[AT]GC[AT]|C |
401 |
BslI
| CCNNNNN|NNGG |
524 |
BsmI
| GAATGCN| |
84 |
Bsp1286I
| G[GAT]GC[CAT]|C |
401 |
BsrDI
| GCAATGNN| |
124 |
BssSI
| C|TCGTG |
133 |
BstAPI
| GCANNNN|NTGC |
118 |
BstF5I
| GGATGNN| |
160 |
BstUI
| CG|CG |
523 |
BstXI
| CCANNNNN|NTGG |
123, 237 |
BstZ17I
| GTA|TAC |
52 |
BtgI
| C|CPuPyGG |
155, 524 |
Cac8I
| GCN|NGC |
479 |
DdeI
| C|TNAG |
550 |
DraIII
| CACNNN|GTG |
407 |
Fnu4HI
| GC|NGC |
3, 112, 301, 321, 438, 522, 615 |
HinfI
| G|ANTC |
204, 372, 633 |
Hpy188I
| TCN|GA |
394, 609 |
Hpy99I
| CG[AT]CG| |
265, 537, 544 |
HpyCH4III
| ACN|GT |
48, 336, 460, 535 |
HpyCH4IV
| A|CGT |
54 |
HpyCH4V
| TG|CA |
29, 110, 119, 173, 319, 400, 613 |
MseI
| T|TAA |
419 |
MslI
| CAPyNN|NNPuTG |
122, 133 |
MspA1I
| C[AC]G|C[GT]G |
236, 524, 620 |
MwoI
| GCNNNNN|NNGC |
109, 270 |
NcoI
| C|CATGG |
155 |
NdeI
| CA|TATG |
434 |
NlaIII
| CATG| |
99, 154, 509, 629 |
NlaIV
| GGN|NCC |
273 |
PvuII
| CAG|CTG |
236, 620 |
SacII
| CCGC|GG |
524 |
Sau96I
| G|GNCC |
467 |
SfcI
| C|TPuPyAG |
593 |
SmlI
| C|TPyPuAG |
490 |
StyI
| C|C[AT][AT]GG |
155 |
Taqƒ¿I
| T|CGA |
254, 444, 542 |
TfiI
| G|A[AT]TC |
204, 372, 633 |
TseI
| G|C[AT]GC |
112, 321, 438, 615 |
Tsp45I
| |GT[CG]AC |
40 |
Tsp509I
| |AATT |
212, 224, 500 |
XbaI
| T|CTAGA |
348 |
Click here to view TAIR data
>AT3G61230.1 length:642
ATGGCGGCGT TTACAGGGAC AACAGACAAA TGCAAGGCGT GTGACAAGAC | 50 |
GGTATACGTT ATGGACTTGA TGACTTTGGA AGGAATGCCT TATCACAAGT | 100 |
CATGCTTCAG GTGCAGCCAT TGCAATGGCA CTCTCGTGAT ATGTAACTAC | 150 |
TCATCCATGG ATGGAGTTTT GTATTGCAAG ACCCATTTTG AACAGCTCTT | 200 |
CAAAGAATCT GGAAATTTCA GCAAGAATTT CCAAACAGCT GGAAAGACCG | 250 |
AGAAATCGAA TGATGCGACG AAGGCTCCAA ACAGGTTATC ATCCTTCTTT | 300 |
AGCGGCACAC AAGACAAATG TGCAGCTTGT AAGAAAACAG TTTATCCTCT | 350 |
AGAGAAGATG ACAATGGAAG GAGAATCTTA CCACAAGACT TGCTTCAGAT | 400 |
GTGCACATAG TGGTTGTCCA TTAACACATT CTTCATATGC TGCTCTCGAT | 450 |
GGCGTCCTTT ACTGTAAGGT CCACTTCAGC CAGCTTTTCC TTGAGAAAGG | 500 |
TAATTACAAT CATGTCCTCC AAGCCGCGGC TAACCACCGT CGCTCGACGG | 550 |
CTGAGGAAGA CAAAACCGAA CCCAAAGAAG ATGAAGCAAA CCCTACAGAA | 600 |
GAAGAAACTT CTGATGCAGC AGCTGAAGAA CATGAATCCT AA | 650 |
>AT3G61230.1 longest ORF length:213
MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY | 50 |
SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF | 100 |
SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD | 150 |
GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE | 200 |
EETSDAAAEE HES | 250 |
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