fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G61230 PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1)

>AT3G61230.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BstBI, BstEII, BstNI, BstYI, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DpnI, DpnII, DraI, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, N.BstNBI, NaeI, , NarI, NciI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsaI, RsrII, SacI, SalI, SapI, Sau3AI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, TspRI, Tth111I, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 52
AccII(FnuDII) CG|CG 523
AciI C|CGC 522
AluI AG|CT 192, 235, 322, 480, 619
AlwNI CAGNNN|CTG 620
ApaLI G|TGCAC 401
ApoI Pu|AATTPy 213, 225
AvaII G|G[AT]CC 467
BfaI C|TAG 347
BsaHI GPu|CGPyC 451
BsaJI C|CNNGG 155, 524
BsiHKAI G[AT]GC[AT]|C 401
BslI CCNNNNN|NNGG 524
BsmI GAATGCN| 84
Bsp1286I G[GAT]GC[CAT]|C 401
BsrDI GCAATGNN| 124
BssSI C|TCGTG 133
BstAPI GCANNNN|NTGC 118
BstF5I GGATGNN| 160
BstUI CG|CG 523
BstXI CCANNNNN|NTGG 123, 237
BstZ17I GTA|TAC 52
BtgI C|CPuPyGG 155, 524
Cac8I GCN|NGC 479
DdeI C|TNAG 550
DraIII CACNNN|GTG 407
Fnu4HI GC|NGC 3, 112, 301, 321, 438, 522, 615
HinfI G|ANTC 204, 372, 633
Hpy188I TCN|GA 394, 609
Hpy99I CG[AT]CG| 265, 537, 544
HpyCH4III ACN|GT 48, 336, 460, 535
HpyCH4IV A|CGT 54
HpyCH4V TG|CA 29, 110, 119, 173, 319, 400, 613
MseI T|TAA 419
MslI CAPyNN|NNPuTG 122, 133
MspA1I C[AC]G|C[GT]G 236, 524, 620
MwoI GCNNNNN|NNGC 109, 270
NcoI C|CATGG 155
NdeI CA|TATG 434
NlaIII CATG| 99, 154, 509, 629
NlaIV GGN|NCC 273
PvuII CAG|CTG 236, 620
SacII CCGC|GG 524
Sau96I G|GNCC 467
SfcI C|TPuPyAG 593
SmlI C|TPyPuAG 490
StyI C|C[AT][AT]GG 155
Taqƒ¿I T|CGA 254, 444, 542
TfiI G|A[AT]TC 204, 372, 633
TseI G|C[AT]GC 112, 321, 438, 615
Tsp45I |GT[CG]AC 40
Tsp509I |AATT 212, 224, 500
XbaI T|CTAGA 348


Click here to view TAIR data

>AT3G61230.1 length:642
ATGGCGGCGT TTACAGGGAC AACAGACAAA TGCAAGGCGT GTGACAAGAC 
50
GGTATACGTT ATGGACTTGA TGACTTTGGA AGGAATGCCT TATCACAAGT 
100
CATGCTTCAG GTGCAGCCAT TGCAATGGCA CTCTCGTGAT ATGTAACTAC 
150
TCATCCATGG ATGGAGTTTT GTATTGCAAG ACCCATTTTG AACAGCTCTT 
200
CAAAGAATCT GGAAATTTCA GCAAGAATTT CCAAACAGCT GGAAAGACCG 
250
AGAAATCGAA TGATGCGACG AAGGCTCCAA ACAGGTTATC ATCCTTCTTT 
300
AGCGGCACAC AAGACAAATG TGCAGCTTGT AAGAAAACAG TTTATCCTCT 
350
AGAGAAGATG ACAATGGAAG GAGAATCTTA CCACAAGACT TGCTTCAGAT 
400
GTGCACATAG TGGTTGTCCA TTAACACATT CTTCATATGC TGCTCTCGAT 
450
GGCGTCCTTT ACTGTAAGGT CCACTTCAGC CAGCTTTTCC TTGAGAAAGG 
500
TAATTACAAT CATGTCCTCC AAGCCGCGGC TAACCACCGT CGCTCGACGG 
550
CTGAGGAAGA CAAAACCGAA CCCAAAGAAG ATGAAGCAAA CCCTACAGAA 
600
GAAGAAACTT CTGATGCAGC AGCTGAAGAA CATGAATCCT AA
650

>AT3G61230.1 longest ORF length:213
MAAFTGTTDK CKACDKTVYV MDLMTLEGMP YHKSCFRCSH CNGTLVICNY 
50
SSMDGVLYCK THFEQLFKES GNFSKNFQTA GKTEKSNDAT KAPNRLSSFF 
100
SGTQDKCAAC KKTVYPLEKM TMEGESYHKT CFRCAHSGCP LTHSSYAALD 
150
GVLYCKVHFS QLFLEKGNYN HVLQAAANHR RSTAEEDKTE PKEDEANPTE 
200
EETSDAAAEE HES
250