fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT3G62090 PIF6, PIL2 PHYTOCHROME-INTERACTING FACTOR 6, phytochrome interacting factor 3-like 2 (.1.2.3)

>AT3G62090.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 607
HindIII A|AGCTT 317, 542
NcoI C|CATGG 189
StyI C|C[AT][AT]GG 189
XbaI T|CTAGA 489


Click here to view TAIR data

>AT3G62090.2 length:1092
ATGATGTTCT TACCAACCGA TTATTGTTGC AGGTTAAGCG ATCAAGAGTA 
50
TATGGAGCTT GTGTTTGAGA ATGGCCAGAT TCTTGCAAAG GGCCAAAGAT 
100
CCAACGTTTC TCTGCATAAT CAACGTACCA AATCGATCAT GGATTTGTAT 
150
GAGGCAGAGT ATAACGAGGA TTTCATGAAG AGTATCATCC ATGGTGGTGG 
200
TGGTGCCATC ACAAATCTCG GGGACACGCA GGTTGTTCCA CAAAGTCATG 
250
TTGCTGCTGC CCATGAAACA AACATGTTGG AAAGCAATAA ACATGTTGAC 
300
GATTCTGAGA CTTTGAAAGC TTCTTCATCA AAGAGGATGA TGGTTGATTA 
350
TCATAACCGA AAGAAGATCA AGTTTATACC TCCTGATGAG CAATCCGTGG 
400
TTGCTGATAG GTCGTTCAAA TTGGGCTTTG ACACTTCCTC CGTAGGTTTC 
450
ACTGAAGACA GTGAAGGATC GATGTATCTA AGCAGTAGTC TAGATGACGA 
500
GTCAGATGAT GCGAGGCCAC AAGTTCCTGC AAGAACAAGA AAAGCTTTGG 
550
TCAAAAGAAA ACGAAATGCA GAAGCGTATA ATTCACCTGA GAGAAATCAA 
600
AGAAATGATA TCAACAAGAA AATGCGTACT TTGCAAAATC TACTACCTAA 
650
CTCTCACAAG GACGACAACG AATCGATGTT GGATGAAGCA ATCAATTATA 
700
TGACAAACCT TCAACTTCAA GTTCAGATGA TGACGATGGG TAACAGATTT 
750
GTTACACCAT CAATGATGAT GCCTTTGGGG CCGAACTACT CTCAGATGGG 
800
TCTAGCAATG GGTGTGGGAA TGCAAATGGG CGAACAACAG TTTCTGCCTG 
850
CACATGTTCT AGGAGCTGGC TTGCCTGGGA TTAATGATTC AGCAGATATG 
900
CTAAGGTTTC TTAACCATCC TGGACTAATG CCAATGCAAA ACTCTGCACC 
950
TTTCATTCCA ACGGAAAATT GTTCCCCACA ATCTGTCCCT CCATCGTGCG 
1000
CTGCTTTCCC TAACCAAATA CCAAATCCCA ACTCTTTGTC AAATTTAGAT 
1050
GGTGCAACCT TACACAAGAA ATCAAGGAAA ACTAACAGAT GA
1100

>AT3G62090.2 longest ORF length:363
MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY 
50
EAEYNEDFMK SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD 
100
DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF 
150
TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ 
200
RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF 
250
VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM 
300
LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD 
350
GATLHKKSRK TNR
400