fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G01060 CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3)

>AT4G01060.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspI, MwoI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, TseI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 192
AluI AG|CT 141, 169
BamHI G|GATCC 179
BsaBI GATNN|NNATC 8
BsaJI C|CNNGG 183
BsmI GAATGCN| 135
BspHI T|CATGA 221
BssKI |CCNGG 183
BstNI CC|[AT]GG 183
BstYI Pu|GATCPy 179
DdeI C|TNAG 19
DpnI GA-CH3|TC 178
DpnII |GATC 178
HindIII A|AGCTT 142
HinfI G|ANTC 104
Hpy188I TCN|GA 57
HpyCH4V TG|CA 135
MboI |GATC 178
MspA1I C[AC]G|C[GT]G 194
N.BstNBI GAGTCNNNN|N 109
NlaIII CATG| 100, 220
NlaIV GGN|NCC 179
NsiI ATGCA|T 136
PspGI |CC[AT]GG 183
Sau3AI |GATC 178
ScrFI CC|NGG 183
SmlI C|TPyPuAG 82
Taqƒ¿I T|CGA 130
Tsp45I |GT[CG]AC 151
Tsp509I |AATT 202, 227


Click here to view TAIR data

>AT4G01060.1 length:234
ATGGATAACC ATCGCAGGAC TAAGCAACCC AAGACCAACT CCATCGTTAC 
50
TTCTTCTTCT GAAGGAACAG AAGTGAGTAG TCTTGAGTGG GAAGTTGTGA 
100
ACATGAGTCA AGAAGAAGAA GATTTGGTCT CTCGAATGCA TAAGCTTGTC 
150
GGTGACAGGT GGGAACTGAT AGCTGGGAGG ATCCCAGGAA GAACCGCTGG 
200
AGAAATTGAG AGGTTTTGGG TCATGAAAAA TTGA
250

>AT4G01060.1 longest ORF length:77
MDNHRRTKQP KTNSIVTSSS EGTEVSSLEW EVVNMSQEEE DLVSRMHKLV 
50
GDRWELIAGR IPGRTAGEIE RFWVMKN
100