fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G01060 CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3)

>AT4G01060.2 CDS map

>>Show genomic map




Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, Fnu4HI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, Hpy99I, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspI, MwoI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, TseI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AciI C|CGC 183
AluI AG|CT 132, 160
BamHI G|GATCC 170
BsaBI GATNN|NNATC 8
BsaJI C|CNNGG 174
BsmI GAATGCN| 126
BspHI T|CATGA 212
BssKI |CCNGG 174
BstNI CC|[AT]GG 174
BstYI Pu|GATCPy 170
DdeI C|TNAG 19
DpnI GA-CH3|TC 169
DpnII |GATC 169
HindIII A|AGCTT 133
HinfI G|ANTC 95
Hpy188I TCN|GA 57
HpyCH4V TG|CA 126
MboI |GATC 169
MspA1I C[AC]G|C[GT]G 185
N.BstNBI GAGTCNNNN|N 100
NlaIII CATG| 91, 211
NlaIV GGN|NCC 170
NsiI ATGCA|T 127
PspGI |CC[AT]GG 174
Sau3AI |GATC 169
ScrFI CC|NGG 174
SmlI C|TPyPuAG 73
Taqƒ¿I T|CGA 121
Tsp45I |GT[CG]AC 142
Tsp509I |AATT 193, 218


Click here to view TAIR data

>AT4G01060.2 length:225
ATGGATAACC ATCGCAGGAC TAAGCAACCC AAGACCAACT CCATCGTTAC 
50
TTCTTCTTCT GAAGTGAGTA GTCTTGAGTG GGAAGTTGTG AACATGAGTC 
100
AAGAAGAAGA AGATTTGGTC TCTCGAATGC ATAAGCTTGT CGGTGACAGG 
150
TGGGAACTGA TAGCTGGGAG GATCCCAGGA AGAACCGCTG GAGAAATTGA 
200
GAGGTTTTGG GTCATGAAAA ATTGA
250

>AT4G01060.2 longest ORF length:74
MDNHRRTKQP KTNSIVTSSS EVSSLEWEVV NMSQEEEDLV SRMHKLVGDR 
50
WELIAGRIPG RTAGEIERFW VMKN
100