fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G01060 CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3)

>AT4G01060.3 genomic map

>>Show CDS map




Uncut enzymes: AatII, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, BspEI, BspMI, BsrFI, BssHII, BssSI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, DrdI, EagI, EarI, EciI, EcoNI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PaeR7I, PflFI, PleI, PmeI, PmlI, PshAI, PspOMI, RsrII, SacI, SacII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, StuI, TliI, Tth111I, XhoI, XmaI
Name Recognition sequence Cut positions
Acc65I G|GTACC 5989
AccII(FnuDII) CG|CG 1917, 5607
AciI C|CGC 4453, 5620, 5647, 5697, 5822, 5991
AflIII A|CPuPyGT 2618, 3141, 3284, 4858, 5980
AhdI GACNNN|NNGTC 4840
AluI AG|CT 91, 332, 523, 717, 865, 1203, 1245, 1251, 1302, 1380, 1529, 1706, 1936, 2473, 2688, 3414, 3675, 3835, 4127, 4300, 4385, 4430, 4698, 5213, 5489, 5961, 5970
AlwNI CAGNNN|CTG 1282, 1333, 1390, 1937
ApoI Pu|AATTPy 797, 1980, 2885, 2892, 3207, 3608, 4205, 4391, 4557, 4665, 5723
AseI AT|TAAT 807, 1623, 2762, 2827, 3375, 3703, 3848, 3857, 4733, 5245
AvaII G|G[AT]CC 401, 1009, 1551, 3014, 3158, 3201, 3922, 4849, 6106
BalI TGG|CCA 5677
BamHI G|GATCC 4440
BanI G|GPyPuCC 4049, 5989
BanII GPuGCPy|C 5787
BclI T|GATCA 106, 4500
BfaI C|TAG 404, 857, 2205, 2626, 2943, 3072, 4683, 4693, 5565, 5713, 5904
BglII A|GATCT 2020
BlpI GC|TNAGC 6076
BsaAI PyAC|GTPu 1149, 4719
BsaBI GATNN|NNATC 368, 1108, 4069
BsaJI C|CNNGG 531, 2404, 2973, 4444, 5601, 5754
BsaWI [AT]|CCGG[AT] 801
BsiEI CGPuPy|CG 3045
BslI CCNNNNN|NNGG 4980, 5433, 5608, 5758, 5774, 5795
BsmI GAATGCN| 4294
Bsp1286I G[GAT]GC[CAT]|C 5787
BspDI AT|CGAT 3047
BspHI T|CATGA 4482
BspT107I(HgiCI) G|G[TC][AG]CC 4049, 5989
BsrBI GAG|CGG 6028
BsrDI GCAATGNN| 238
BsrGI T|GTACA 216, 677
BsrI ACTGGN| 2003, 3657
BssKI |CCNGG 312, 4444, 5601, 5836
BstAPI GCANNNN|NTGC 1391
BstF5I GGATGNN| 1038, 2197, 2280, 2409, 2950, 3224, 5759
BstNI CC|[AT]GG 312, 4444
BstUI CG|CG 1917, 5607
BstYI Pu|GATCPy 2006, 2020, 4440, 5858
BtgI C|CPuPyGG 2404, 5754
Cac8I GCN|NGC 526, 886, 1370, 2482, 2536, 5606, 5960
ClaI AT|CGAT 3047
DdeI C|TNAG 126, 330, 554, 907, 1284, 1335, 1709, 1733, 1823, 1847, 2099, 2805, 2848, 2898, 3532, 4003, 4016, 4080, 4701, 5211, 5446, 5614, 6075
DpnI GA-CH3|TC 105, 1561, 1929, 2005, 2019, 3036, 3044, 3326, 3707, 4320, 4439, 4499, 4964, 4986, 5060, 5217, 5798, 5857, 5897
DpnII |GATC 105, 1561, 1929, 2005, 2019, 3036, 3044, 3326, 3707, 4320, 4439, 4499, 4964, 4986, 5060, 5217, 5798, 5857, 5897
DraI TTT|AAA 3342, 4554, 6050
DraIII CACNNN|GTG 448
EaeI Py|GGCCPu 5677
EcoO109I PuG|GNCCPy 402, 3015, 4850
EcoRI G|AATTC 5723
Fnu4HI GC|NGC 522, 719, 725, 867, 1301, 1382, 1391, 1693, 5491, 5609, 5620, 5972, 6029
HaeIII GG|CC 2385, 4649, 5435, 5610, 5676
HhaI GCG|C 5764
HinP1I G|CGC 5764
HincII GTPy|PuAC 2589, 4880, 6097
HindIII A|AGCTT 2689, 3676, 4301
HinfI G|ANTC 36, 363, 475, 550, 942, 1241, 1843, 1907, 2044, 2591, 3354, 4263, 5168, 5717, 5875, 6061
HpaI GTT|AAC 4880, 6097
HpaII C|CGG 800, 5601, 5836
Hpy188I TCN|GA 103, 221, 329, 689, 1681, 1846, 1932, 2441, 2847, 2888, 3643, 3669, 4004, 4118, 4201, 4962, 6058
Hpy99I CG[AT]CG| 5886
HpyCH4III ACN|GT 287, 1223, 1265, 1295, 1316, 1651, 1715, 3924, 4046, 5113, 5347, 5930, 6104
HpyCH4IV A|CGT 1148, 2209, 2546, 2857, 3141, 3284, 3498, 4718, 4931, 5007
HpyCH4V TG|CA 233, 267, 393, 512, 744, 868, 883, 1299, 1383, 1392, 1464, 1753, 2176, 2259, 2414, 2479, 2483, 2509, 2674, 3083, 3210, 3224, 3811, 3819, 3826, 3976, 4294, 5085, 5196, 5226, 5334, 5945
KpnI GGTAC|C 5989
MboI |GATC 105, 1561, 1929, 2005, 2019, 3036, 3044, 3326, 3707, 4320, 4439, 4499, 4964, 4986, 5060, 5217, 5798, 5857, 5897
MfeI C|AATTG 967, 2747, 3688, 5161
MscI TGG|CCA 5677
MseI T|TAA 281, 356, 383, 565, 628, 633, 665, 733, 806, 1084, 1526, 1622, 1639, 1921, 2067, 2140, 2154, 2213, 2369, 2604, 2639, 2761, 2780, 2800, 2826, 2830, 2881, 2927, 2956, 3187, 3299, 3306, 3336, 3341, 3374, 3411, 3568, 3577, 3594, 3702, 3711, 3715, 3847, 3856, 3884, 3894, 4137, 4326, 4363, 4553, 4590, 4606, 4732, 4743, 4751, 4879, 4955, 5141, 5185, 5221, 5244, 5431, 5740, 6049, 6096
MslI CAPyNN|NNPuTG 4771
MspA1I C[AC]G|C[GT]G 590, 866, 4455
MspI C|CGG 800, 5601, 5836
MwoI GCNNNNN|NNGC 725, 1211, 1244, 1379, 1391, 1693, 3834, 4657, 5785, 5969
N.BstNBI GAGTCNNNN|N 1912, 4268, 5722
NciI CC|[CG]GG 5601, 5836
NcoI C|CATGG 2404
NdeI CA|TATG 1462, 2337
NlaIII CATG| 1600, 2127, 2403, 2460, 2481, 2617, 3212, 3315, 3367, 3464, 3722, 4059, 4164, 4259, 4481, 4765, 4835, 4857, 5679, 5979
NlaIV GGN|NCC 401, 4049, 4440, 4850, 5786, 5989
NsiI ATGCA|T 1465, 2510, 4295
NspI PuCATG|Py 2482, 2618, 3723, 4836, 4858, 5980
PacI TTAAT|TAA 2830, 3715
PciI A|CATGT 2618, 4858, 5980
PflMI CCANNNN|NTGG 5774
PpuMI PuG|G[AT]CCPy 402, 3015, 4850
PsiI TTA|TAA 61, 1537, 1543, 4573, 5124
PspGI |CC[AT]GG 312, 4444
PstI CTGCA|G 1384
PvuI CGAT|CG 3045
PvuII CAG|CTG 866
RsaI GT|AC 215, 676, 1279, 1330, 1597, 1653, 3500, 3790, 4008, 4716, 5988
Sau3AI |GATC 105, 1561, 1929, 2005, 2019, 3036, 3044, 3326, 3707, 4320, 4439, 4499, 4964, 4986, 5060, 5217, 5798, 5857, 5897
Sau96I G|GNCC 401, 1009, 1551, 3014, 3158, 3201, 3922, 4649, 4849, 6106
ScaI AGT|ACT 4009
ScrFI CC|NGG 312, 4444, 5601, 5836
SfcI C|TPuPyAG 832, 1005, 1249, 1318, 1384, 2467, 4514
SmlI C|TPyPuAG 188, 2692, 4241, 4614, 5079
SphI GCATG|C 2482
SspI AAT|ATT 65, 178, 230, 1781, 2798, 3304, 3480, 3732, 4643, 5182, 5381
StyI C|C[AT][AT]GG 531, 2404, 2973
SwaI ATTT|AAAT 3343
Taqƒ¿I T|CGA 472, 477, 653, 1268, 1776, 1840, 2702, 3046, 4289, 4532, 5458, 5719
TfiI G|A[AT]TC 36, 363, 475, 942, 1241, 1843, 2044, 3354, 5168, 5875
TseI G|C[AT]GC 522, 719, 725, 867, 1301, 1382, 1391, 1693, 5491, 5972
Tsp45I |GT[CG]AC 2089, 2558, 2788, 3257, 3784, 4310
Tsp509I |AATT 116, 247, 344, 614, 630, 796, 966, 1096, 1539, 1545, 1979, 2490, 2746, 2828, 2884, 2891, 2954, 3194, 3206, 3338, 3381, 3409, 3575, 3607, 3638, 3687, 3713, 3845, 3854, 3873, 3882, 4204, 4360, 4365, 4390, 4463, 4488, 4556, 4664, 4688, 4734, 5160, 5223, 5242, 5722, 5890
TspRI NNCA[CG]TGNN| 111, 1317, 1349, 1361, 2918, 4524, 5056
XbaI T|CTAGA 2627, 4694, 5714
XcmI CCANNNNN|NNNNTGG 4631, 5689
XmnI GAANN|NNTTC 4586, 5632


Click here to view TAIR data

>AT4G01060 genomic sequence (4062-4125,4224-4317,4420-4495,) length:6113
CACCACATTA TACATTCTGG ACAAgtaagg ctcttggaat cttacaaaat 
50
atattgaaag ttataatatt gaggcttata gttacattga gtagcttata 
100
ttgtctgatc actgaataat tatagtctca gcattccttc attatctatg 
150
aacctgtgat tgtttgcttt gtggaagaat attcaaactt gagtagtgat 
200
aatcataagt gttattgtac atctgataga atattgcaat gggagagaaa 
250
ttgaaaagca ttttagattg cacacattgt tgttaataca gtctaactct 
300
ttgaatggaa agccagGTTT GATGGAAACT CTGAGCTTGT TGCTGAATTG 
350
GTGGCTCTTA ATGGATTCAA ATCTGCTTAT GCGATTAAAG ATGGTGCAGA 
400
GGGACCTAGA GGCTGGTTGg tgtgtgttcc ctttcctctt atcccacaat 
450
gtgtccttct tcaacaaatc ctttcgattc gacttattta catttgtcat 
500
tatatatctg gtttgcagAA TAGCAGCTTG CCTTGGATAG AGCCAAAGAA 
550
GACTCTCAGC CTTGATTTAA GCAGTTTGAC GGATAGCATC AGCGGTGTAT 
600
TTGGTgtgag tatccaattt tacattcatt taatttaagt ttctgtaaca 
650
aacatcgaac aatgatttaa cataaatgta cagGAGAGTT CTGATGGTGT 
700
ATCTGTCGCT CTTGGAGTAG CTGCTGCTGC TGGATTAAGT GTTTTTGCAT 
750
TTACAGAGgt cagtctttcg gtattatccc tcttattgtc tccagaaaat 
800
tccggtatta atcttatatc tatcatcatc cctacagATT GAAACCATAC 
850
TCCAACTACT AGGTTCAGCT GCACTTGTTC AACTTGCAGG CAAGAAACTT 
900
CTATTTGCTG AGgcaagttc ttcccatctt ttcattcatc aagattcagt 
950
ttgaatgtat ttatcgcaat tggtgatgtt ttgatggtta cttttctata 
1000
ctctctacag GACCGAAAGC AAACTCTAAA ACAGGTGGAT GAGTTCTTGA 
1050
ACACAAAGGT TGCCCCTAAA GAACTTGTTG ATGAGTTAAA Ggtaactaat 
1100
ttagatacat atctccatta gtaataaaac cctttataga aataactcta 
1150
cgtggaataa cagGAAATAG GAAAGGCTCT TCTTCCTCAA TCAACAAGCA 
1200
ACAAAGCTCT CCCAGCACCA GCAACAGTAA CAGCAGAAGC AGAATCAGCT 
1250
ACAGCTACAA CCACCACAGT CGATAAACCA GTACCTGAGC CAGAAACAGT 
1300
TGCAGCTACA ACAACCACTG TAGATAAACC AGTACCTGAG CCAGAGCCAG 
1350
TGCCAGAGCC AGTGCCAGTG CCAGCGATTG AAGCTGCAGT CGCTGCACAA 
1400
GTAATCACAG AACCAACCGA AACAGAAGCC AAACCAAAAC CTCATTCAAG 
1450
ACCTCTCTCT CCATATGCAT CGgtaatgtt tctactttct cataaagagg 
1500
ctcttttggt gggaaataaa gaaaccttta agctgtttat aattataatt 
1550
tggacctccg ttgatccttg aagaagtatc tttatgattt acgagttcgt 
1600
acatgggttt ctgttatcgt ttattaatat gatgtctttc ttaactcttt 
1650
tacagTACCC TGACTTGAAG CCTCCATCTT CTCCGATGCC ATCGCAGCCC 
1700
TGAaaacagc taagaacagt ctctctctcg ttacttagtc tggttttgtc 
1750
ctcctgcaaa cagaagaaca aaagtggtcg aatattgtaa cttgttcttt 
1800
tttctctcgt tttttctccc gaacttagat gctactttgt gtcgaatctg 
1850
agataagtgg actttgtttt gtttttctcc ctttatacca ccattgagtt 
1900
caaacaagag tctgtcatcg cgttaaaggg gatcagaagc tgtgtgaggg 
1950
gtgtattgga cgaaataaaa gttgtgggga aatttccaaa tatcttgtga 
2000
ttactggatc ttgtgggata gatctctttc tttctcttat tctggattcc 
2050
ctatacataa caaaaaggtt aaatggggta atgaaaagtg tgacatatac 
2100
ttagcataaa ccaatgtgta gaataatcca tgtttccttt attaagtgct 
2150
atgcgttaat cggcatctat aaagtgttgc attgatgaac aaagtggatg 
2200
cctaaactag acgtttaact aaatgtttag aatgaaatct tcatctcatc 
2250
taaaaagtgt tgcattgatg taaaaagtgg atgcccatta gttcttggct 
2300
ttgaaatgtt tttagaatga aatcttcatc aatctccata tgtggttcaa 
2350
tccactcatt ttatcttttg ttaaagatgt tcttcaggcc aatataatga 
2400
tgaccatgga tggtttgcaa ctcgcatata acacttcttt atccgatggt 
2450
tacaagtatt acatggctat agatagcttt tgcatgcaac aaattatcta 
2500
tcaaagttta tgcatcctct aaaatatggt cattggcaag ccactaaacg 
2550
tatatattgt gacaatgtat gatgatatat ttttatgtgt tgactccgtt 
2600
tttcattaag taatgaaaca tgttgctcta gattaccatt ttaatcgcaa 
2650
acatatatgt tgctctacca cgcattgcat caaatgataa gcttgaggac 
2700
gcttcgacaa aaacatattt ctccttcttc ttactgaacc aaatgacaat 
2750
tgacaaaccc cattaataaa atcggttagt gttaatgtgt cactcataat 
2800
attaacttag taaagaacaa gaccacatta attaaatcag gtgttagtct 
2850
gagaatatac gtttctcttc ctcattccaa acttaaattc ggaatttact 
2900
gagaatatat tgttagcact gaaaaaggtt aagttgaaag tttgctaggg 
2950
atggcaatta aatatagtct tgccttgggg atattccctt cgtggacttg 
3000
taagtttatt tataggtcct cttatgtata tatagatgat ctaacgatcg 
3050
atatactatg aaaaaagttg ttactagatt ttattgcagg taatagtgtt 
3100
gaataacccg aaccaataaa gcagttgtaa cgaacacacg acacgttgct 
3150
tactgcgagg accactttgt tttttgtttt ttttggcttt aagccaattt 
3200
aggaccaaat ttgcatgatt gaggatgcaa gtatccaacc cattttcatc 
3250
tttcgtagtg acactcattt acttttgtga tggacacgtt atagtatatc 
3300
ttaaatatta aagagacatg attgggggat cattgtttta atttaaataa 
3350
tgtagattct attcttttca tggtattaat ccaatttata gaaagttatg 
3400
tgttattagc aattaagcta aatgatgaaa acaatcagtt tagtgaaaca 
3450
aactcgccga gaaaacatga atggttgaaa atattattgt gttttacaaa 
3500
cgtacacgag gacaatagtt ttgtaagttt ttcttaggca ttgaaaaatg 
3550
tttgatacaa aaagtaatgt taaaataatt aaaaatgatt ttgtcttaat 
3600
atatccaaaa tttcaatcta ttatgaacaa agggagtata atttctgatt 
3650
gaatgaactg gaatagcaat cagaaaagct ttgaaaacaa ttgttgttga 
3700
ttattaatga tcttaattaa cggcatgtat caatatttat acaacttatg 
3750
ttccagtcca agccatcaca acggagtaaa tgaagtcacg ggtacttgtg 
3800
gtttttattg gttgcaaact tgcaacttgc aaagatagct aacaataatt 
3850
aatataatta atgagaacaa aaccaattta gtaaattaaa atcctttaac 
3900
atagaaaccg accaaacccg ttggaccgtt ggttacttga tttggttagt 
3950
tgctataaat agaaatgatg gttcgtgtgc aaccttcaaa atacgaccac 
4000
tctctcagag tactctctta gtttctttct tcttcttctt tgtaatacgg 
4050
tgccgtttga cATGGATAAC CATCGCAGGA CTAAGCAACC CAAGACCAAC 
4100
TCCATCGTTA CTTCTTCTTC TGAAGgtaag ctgaaaactt aaacaccttc 
4150
gttttctcat ttttccatgt ttttttatac ttatctatat ataatgagaa 
4200
atctgaattt tggtgatgac aagGAACAGA AGTGAGTAGT CTTGAGTGGG 
4250
AAGTTGTGAA CATGAGTCAA GAAGAAGAAG ATTTGGTCTC TCGAATGCAT 
4300
AAGCTTGTCG GTGACAGgtt tgatctttta actaataatg aatactattt 
4350
cgtaggaaaa taatttaatt gtaacaccat agtaaaagct gaattttgtg 
4400
tgttattatt tgatgaaagG TGGGAACTGA TAGCTGGGAG GATCCCAGGA 
4450
AGAACCGCTG GAGAAATTGA GAGGTTTTGG GTCATGAAAA ATTGAaaagt 
4500
gatcaatata tctctatagt ttcactgatt gtttcgatta tattccgttg 
4550
tattttaaat ttaccaactc tgttataaga agaaaacttt cttaaatccc 
4600
aaaccattta actctcaaga accatttatt gtgtgggcta cgaatatttg 
4650
ggccttccaa gcctaaattt atttttttgc catcctagta atttctagaa 
4700
gctaagtcgt agatgttgta cgtggatatt tcattaattt ctgcttaaag 
4750
ccttaaacac ttgacacatg aaagtggcaa ataacctact tcaaaacaaa 
4800
acaaaagtgg aagtcgtttt acaagtcata aaatgacatg ctgtcttcag 
4850
gtcccacaca tgttttctgt atatttgtcg ttaacgctat ttcacctact 
4900
ccacacacac acacttattt tcttggtcat ccacgtttta gacttttagt 
4950
ttttccttaa tctctgatcc ataaccacga aacggacgat cttcaataaa 
5000
aacccataac gtatctcatt accaaacaaa catattgttg aaatctatgt 
5050
gtctcactga tgatctatat atgtaactct tgagattgca acaaatgttt 
5100
agaacttgaa caaactgtta tttttataag ccatatatat atttaactat 
5150
tgacgataga caattgatga ttctcttgaa caatatttaa ctatatatgc 
5200
aacatcttct tctaagctga tcttaattgc aacatcttct acgaattaat 
5250
caaaagccaa aaacatatac aaataaaagt tgagacaaac gaagcaaaga 
5300
aaagtagaac atacatatac atacagaaac acatttgcac aaatcccacc 
5350
gttgattata caaatcatat tagaacatca aatatTTAGT GGTTGCCATT 
5400
TTGCTCTAAC TCTTTTTTGT GGGCTTTCCA CTTTAAGGCC ACAAGACTAA 
5450
GTGCTTTTGT CGAAGTCCCA TCATCCTTCA ACACCCTACA AGCTGCTTCC 
5500
TTCAACTCCT TCATCTTGTT CCTCACTCCT TTGCCTTCTT CACCTTCCAT 
5550
CAATCCTTTT ACCACTCTAG CCACCTCTTC TCTTCTAACT AACCCATCGT 
5600
CCCCGGCACG CGGCCTAAGT GCCGCACGAA TATCTTCACT CAACAAAACC 
5650
GCATTCATCT TCTGTTCTGC GTATAATGGC CATGCTATAA GTGGAATACC 
5700
GCTTACTACA CTCTCTAGAG TCGAATTCCA TCCACAATGA GTTAAAAATC 
5750
CTCCCGTGGA TGGATGCGCC AAGACTTGGG CTTGTGGAGC CCAAAAAGGG 
5800
ATCACAAAAC CTCTTTTTTT AGTCCGCTCT AAAAATCCCG GTGGTAAAAA 
5850
TGTCAATGGA TCTGTTTGGC TATGTGAATC AAAATACGAC GAATTAGCGA 
5900
TCCCACTAGG ACTTCGTATG ACCCAAAGAA ACCGTTGCTC ACTATCTGCA 
5950
AGACCAAGAG CAAGCTCATT GAGCTGCTCA CATGTGAGGG TACCGCCACT 
6000
ACCAAAGGAC ACATATAAAA CCGAACCGAG CGGCTGGTTA TCCAACCACT 
6050
TTAAACATTC AGACTCTTCG GTTTGCTTAG CCTCTTGCTT ACCAATGTTA 
6100
ACCAACGGTC CAA
6150