Locus |
Common name |
Short description |
AT4G09460 |
ATMYB6, ATMYB8 |
myb domain protein 6 (.1) |
>AT4G09460.1 CDS map
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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MwoI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccII(FnuDII)
| CG|CG |
690 |
AciI
| C|CGC |
126 |
AluI
| AG|CT |
25, 43, 245, 274, 342, 502, 585 |
ApoI
| Pu|AATTPy |
486, 591 |
AseI
| AT|TAAT |
172 |
BamHI
| G|GATCC |
616 |
BfaI
| C|TAG |
510 |
BglII
| A|GATCT |
7 |
BsaBI
| GATNN|NNATC |
221 |
BsaJI
| C|CNNGG |
667 |
BslI
| CCNNNNN|NNGG |
683 |
BssKI
| |CCNGG |
288, 619, 677 |
BstNI
| CC|[AT]GG |
288, 619 |
BstUI
| CG|CG |
690 |
BstYI
| Pu|GATCPy |
7, 534, 616 |
BtgI
| C|CPuPyGG |
667 |
DdeI
| C|TNAG |
348 |
DpnI
| GA-CH3|TC |
6, 62, 188, 221, 362, 533, 615 |
DpnII
| |GATC |
6, 62, 188, 221, 362, 533, 615 |
Fnu4HI
| GC|NGC |
514 |
HhaI
| GCG|C |
689 |
HinP1I
| G|CGC |
689 |
HindIII
| A|AGCTT |
343 |
HinfI
| G|ANTC |
390, 640, 657 |
HpaII
| C|CGG |
538, 677 |
Hpy188I
| TCN|GA |
380, 492, 629, 637 |
Hpy99I
| CG[AT]CG| |
520 |
HpyCH4III
| ACN|GT |
94, 355, 399, 665, 701 |
HpyCH4IV
| A|CGT |
67, 196 |
MboI
| |GATC |
6, 62, 188, 221, 362, 533, 615 |
MseI
| T|TAA |
171, 192, 333, 384, 468, 599 |
MspA1I
| C[AC]G|C[GT]G |
128 |
MspI
| C|CGG |
538, 677 |
N.BstNBI
| GAGTCNNNN|N |
645 |
NciI
| CC|[CG]GG |
677 |
NlaIV
| GGN|NCC |
616 |
PspGI
| |CC[AT]GG |
288, 619 |
Sau3AI
| |GATC |
6, 62, 188, 221, 362, 533, 615 |
ScrFI
| CC|NGG |
288, 619, 677 |
SmlI
| C|TPyPuAG |
410 |
Taqƒ¿I
| T|CGA |
506 |
TfiI
| G|A[AT]TC |
390, 657 |
Tsp45I
| |GT[CG]AC |
352, 698 |
Tsp509I
| |AATT |
173, 203, 314, 458, 485, 569, 590 |
TspRI
| NNCA[CG]TGNN| |
702 |
Click here to view TAIR data
>AT4G09460.1 length:711
ATGGGAAGAT CTCCTTGTTG TGAAAAAGCT CACACAAACA AAGGAGCTTG | 50 |
GACTAAAGAA GAAGATCAAC GTCTCGTAGA TTATATCCGT AATCACGGTG | 100 |
AAGGTTGTTG GCGTTCTCTT CCTAAATCCG CTGGATTGTT GCGTTGTGGT | 150 |
AAAAGTTGTA GATTGAGATG GATTAATTAC CTTCGTCCTG ATCTTAAACG | 200 |
TGGTAATTTT ACTGATGATG AAGATCAAAT CATCATCAAA CTCCATAGCT | 250 |
TACTCGGTAA CAAATGGTCA TTGATAGCTG GAAGATTACC AGGAAGAACA | 300 |
GATAACGAAA TAAAGAATTA TTGGAACACT CATATTAAGA GGAAGCTTCT | 350 |
TAGTCACGGT ATTGATCCAC AAACTCATCG TCAGATTAAC GAATCCAAAA | 400 |
CGGTGTCGTC TCAAGTTGTT GTTCCTATTC AAAACGATGC CGTTGAGTAT | 450 |
TCTTTTTCCA ATTTAGCCGT TAAACCGAAG ACGGAAAATT CCTCCGATAA | 500 |
CGGAGCTTCG ACTAGCGGCA CGACGACGGA CGAGGATCTC CGGCAGAATG | 550 |
GGGAGTGTTA TTATAGTGAT AATTCAGGAC ATATAAAGCT GAATTTGGAT | 600 |
TTAACTCTTG GGTTTGGATC CTGGTCGGGT CGGATAGTCG GAGTCGGGTC | 650 |
ATCGGCTGAT TCTAAACCGT GGTGCGACCC GGTGATGGAG GCGCGTTTGT | 700 |
CACTGTTGTA A | 750 |
>AT4G09460.1 longest ORF length:236
MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG | 50 |
KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT | 100 |
DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY | 150 |
SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD | 200 |
LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL | 250 |
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