fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G09460 ATMYB6, ATMYB8 myb domain protein 6 (.1)

>AT4G09460.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HincII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MwoI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 690
AciI C|CGC 126
AluI AG|CT 25, 43, 245, 274, 342, 502, 585
ApoI Pu|AATTPy 486, 591
AseI AT|TAAT 172
BamHI G|GATCC 616
BfaI C|TAG 510
BglII A|GATCT 7
BsaBI GATNN|NNATC 221
BsaJI C|CNNGG 667
BslI CCNNNNN|NNGG 683
BssKI |CCNGG 288, 619, 677
BstNI CC|[AT]GG 288, 619
BstUI CG|CG 690
BstYI Pu|GATCPy 7, 534, 616
BtgI C|CPuPyGG 667
DdeI C|TNAG 348
DpnI GA-CH3|TC 6, 62, 188, 221, 362, 533, 615
DpnII |GATC 6, 62, 188, 221, 362, 533, 615
Fnu4HI GC|NGC 514
HhaI GCG|C 689
HinP1I G|CGC 689
HindIII A|AGCTT 343
HinfI G|ANTC 390, 640, 657
HpaII C|CGG 538, 677
Hpy188I TCN|GA 380, 492, 629, 637
Hpy99I CG[AT]CG| 520
HpyCH4III ACN|GT 94, 355, 399, 665, 701
HpyCH4IV A|CGT 67, 196
MboI |GATC 6, 62, 188, 221, 362, 533, 615
MseI T|TAA 171, 192, 333, 384, 468, 599
MspA1I C[AC]G|C[GT]G 128
MspI C|CGG 538, 677
N.BstNBI GAGTCNNNN|N 645
NciI CC|[CG]GG 677
NlaIV GGN|NCC 616
PspGI |CC[AT]GG 288, 619
Sau3AI |GATC 6, 62, 188, 221, 362, 533, 615
ScrFI CC|NGG 288, 619, 677
SmlI C|TPyPuAG 410
Taqƒ¿I T|CGA 506
TfiI G|A[AT]TC 390, 657
Tsp45I |GT[CG]AC 352, 698
Tsp509I |AATT 173, 203, 314, 458, 485, 569, 590
TspRI NNCA[CG]TGNN| 702


Click here to view TAIR data

>AT4G09460.1 length:711
ATGGGAAGAT CTCCTTGTTG TGAAAAAGCT CACACAAACA AAGGAGCTTG 
50
GACTAAAGAA GAAGATCAAC GTCTCGTAGA TTATATCCGT AATCACGGTG 
100
AAGGTTGTTG GCGTTCTCTT CCTAAATCCG CTGGATTGTT GCGTTGTGGT 
150
AAAAGTTGTA GATTGAGATG GATTAATTAC CTTCGTCCTG ATCTTAAACG 
200
TGGTAATTTT ACTGATGATG AAGATCAAAT CATCATCAAA CTCCATAGCT 
250
TACTCGGTAA CAAATGGTCA TTGATAGCTG GAAGATTACC AGGAAGAACA 
300
GATAACGAAA TAAAGAATTA TTGGAACACT CATATTAAGA GGAAGCTTCT 
350
TAGTCACGGT ATTGATCCAC AAACTCATCG TCAGATTAAC GAATCCAAAA 
400
CGGTGTCGTC TCAAGTTGTT GTTCCTATTC AAAACGATGC CGTTGAGTAT 
450
TCTTTTTCCA ATTTAGCCGT TAAACCGAAG ACGGAAAATT CCTCCGATAA 
500
CGGAGCTTCG ACTAGCGGCA CGACGACGGA CGAGGATCTC CGGCAGAATG 
550
GGGAGTGTTA TTATAGTGAT AATTCAGGAC ATATAAAGCT GAATTTGGAT 
600
TTAACTCTTG GGTTTGGATC CTGGTCGGGT CGGATAGTCG GAGTCGGGTC 
650
ATCGGCTGAT TCTAAACCGT GGTGCGACCC GGTGATGGAG GCGCGTTTGT 
700
CACTGTTGTA A
750

>AT4G09460.1 longest ORF length:236
MGRSPCCEKA HTNKGAWTKE EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG 
50
KSCRLRWINY LRPDLKRGNF TDDEDQIIIK LHSLLGNKWS LIAGRLPGRT 
100
DNEIKNYWNT HIKRKLLSHG IDPQTHRQIN ESKTVSSQVV VPIQNDAVEY 
150
SFSNLAVKPK TENSSDNGAS TSGTTTDEDL RQNGECYYSD NSGHIKLNLD 
200
LTLGFGSWSG RIVGVGSSAD SKPWCDPVME ARLSLL
250