|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G09960 | AGL11, STK | SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) |
>AT4G09960.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssKI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, ClaI, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HincII, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, MspI, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, TseI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 259, 454 |
| AciI | C|CGC | 258 |
| AflII | C|TTAAG | 354 |
| AluI | AG|CT | 99, 211, 285, 397, 474, 580 |
| ApoI | Pu|AATTPy | 674 |
| AseI | AT|TAAT | 568 |
| AvaII | G|G[AT]CC | 107, 415 |
| BfaI | C|TAG | 234, 405 |
| BlpI | GC|TNAGC | 284 |
| BslI | CCNNNNN|NNGG | 199 |
| BssSI | C|TCGTG | 149 |
| BstAPI | GCANNNN|NTGC | 126, 431 |
| BstUI | CG|CG | 259, 454 |
| BstYI | Pu|GATCPy | 299, 634 |
| DdeI | C|TNAG | 283, 288, 498, 505 |
| DpnI | GA-CH3|TC | 186, 298, 409, 633, 659 |
| DpnII | |GATC | 186, 298, 409, 633, 659 |
| EaeI | Py|GGCCPu | 153 |
| Fnu4HI | GC|NGC | 258 |
| HaeIII | GG|CC | 152 |
| HhaI | GCG|C | 128, 455 |
| HinP1I | G|CGC | 128, 455 |
| HindIII | A|AGCTT | 212, 581 |
| HinfI | G|ANTC | 276, 308, 326, 339, 383 |
| Hpy188I | TCN|GA | 83, 219, 329, 561, 657, 685 |
| HpyCH4III | ACN|GT | 240 |
| HpyCH4IV | A|CGT | 56 |
| HpyCH4V | TG|CA | 62, 118, 571 |
| MboI | |GATC | 186, 298, 409, 633, 659 |
| MfeI | C|AATTG | 575 |
| MseI | T|TAA | 353, 567 |
| MwoI | GCNNNNN|NNGC | 126, 431, 579 |
| NlaIII | CATG| | 425 |
| RsaI | GT|AC | 202, 262 |
| Sau3AI | |GATC | 186, 298, 409, 633, 659 |
| Sau96I | G|GNCC | 107, 415 |
| SmlI | C|TPyPuAG | 354, 391 |
| Taqƒ¿I | T|CGA | 46, 447 |
| TfiI | G|A[AT]TC | 276, 308, 326, 383 |
| Tsp45I | |GT[CG]AC | 54 |
| Tsp509I | |AATT | 574, 596, 673 |
| TspRI | NNCA[CG]TGNN| | 241 |
Click here to view TAIR data
>AT4G09960.1 length:693
ATGGGAAGAG GAAAGATAGA AATAAAGAGG ATAGAGAACT CAACAAATCG | 50 |
ACAAGTGACG TTTTGCAAAA GAAGAAATGG ACTTCTGAAG AAAGCCTATG | 100 |
AGCTTTCGGT CCTTTGCGAT GCAGAAGTTG CGCTCATTGT TTTCTCCACT | 150 |
CGTGGCCGTC TCTATGAATA CGCCAATAAC AACATAAGAT CAACCATTGA | 200 |
GAGGTACAAG AAAGCTTGTT CTGATAGCAC CAACACTAGC ACTGTCCAAG | 250 |
AAATCAATGC CGCGTACTAT CAACAAGAAT CTGCTAAGCT GAGACAACAG | 300 |
ATCCAAACGA TTCAAAACTC CAACAGGAAT CTGATGGGAG ACTCTTTGAG | 350 |
TTCCTTAAGT GTCAAGGAAC TAAAACAAGT TGAGAATCGC CTTGAGAAAG | 400 |
CTATCTCTAG GATCAGGTCC AAGAAGCATG AGTTGCTTTT AGTTGAAATC | 450 |
GAAAACGCGC AGAAAAGGGA GATTGAGCTT GACAATGAGA ACATCTATCT | 500 |
AAGAACTAAG GTAGCAGAAG TGGAGAGGTA TCAACAACAC CATCATCAAA | 550 |
TGGTTAGTGG TTCAGAGATT AATGCAATTG AAGCTTTAGC CTCACGCAAT | 600 |
TACTTTGCTC ATAGCATTAT GACTGCTGGT TCTGGATCTG GTAATGGAGG | 650 |
TTCTTACTCT GATCCCGACA AGAAAATTCT TCATCTCGGA TAA | 700 |
>AT4G09960.1 longest ORF length:230
MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST | 50 |
RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ | 100 |
IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI | 150 |
ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN | 200 |
YFAHSIMTAG SGSGNGGSYS DPDKKILHLG | 250 |