fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G09960 (AGL11, STK)

Alias AGL11, STK
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SEPALLATA1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
TAIR annotation a MADS box transcription factor expressed in the carpel and ovules (.1.2.3.4)
Gene model
Gene model cDNA support
AT4G09960.1 101
AT4G09960.4 92
AT4G09960.2 90
AT4G09960.3 57
Entry clone (w/o stop) RE_03F02_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10214: developmental processes ->seed coat development
(P) 1903338: other cellular processes ->regulation of cell wall organization or biogenesis
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48316: developmental processes ->seed development
(P) 48440: developmental processes ->carpel development
(P) 48481: developmental processes ->plant ovule development
(P) 51302: other cellular processes ->regulation of cell division
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 7275: developmental processes ->multicellular organism development
(P) 80060: developmental processes ->integument development
(P) 80155: other biological processes ->regulation of double fertilization forming a zygote and endosperm
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 4 6
soybean 4 14 18
rice 1 4 5
sorghum 1 3 4
physcomitrella
Total 1 7 25 33
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project

View all photo        		
        small green abnormal flower

         abnormal flower (direct input)


        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID26
           Chrysanthemum
           35S:AtCDS-SRDX
           2005-08-18
            
           no phenotype 
            
          

          

           ID78
           Gentiana
           AtACT2pro:AtCDS-SRDX
           2006-03-30
            
           No phenotype 
            
          

          

           ID50016
           Torenia
           35S:AtCDS-SRDX
           2005-08-18
            
           serrated petal edge, not flowering (stay flower bud) 
           
          

         

         

          Comment