fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G14540 NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1)

>AT4G14540.1 genomic map

>>Show CDS map




Uncut enzymes: AccIII(BspMII), AfeI, AflII, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspMI, BsrBI, BsrGI, BssHII, BstEII, BstZ17I, Bsu36I, BtrI, DraIII, DrdI, EagI, EarI, EciI, FauI, FokI, FseI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, MboII, MluI, MlyI, MnlI, NaeI, , NarI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PflFI, PflMI, PleI, PmeI, PspOMI, PvuII, RsrII, SalI, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SmaI, SnaBI, SpeI, SphI, StuI, SwaI, TseI, Tth111I, XbaI, XcmI, XmaI
Name Recognition sequence Cut positions
AatII GACGT|C 3127
Acc65I G|GTACC 1622
AccI GT|[AC][TG]AC 3194
AccII(FnuDII) CG|CG 3439
AciI C|CGC 1919, 2004, 2101, 2267, 3438
AclI AA|CGTT 1701, 4134
AflIII A|CPuPyGT 2450, 3953, 4101
AgeI A|CCGGT 3459, 3863, 4239
AhdI GACNNN|NNGTC 1461, 4027
AluI AG|CT 503, 517, 1316, 1361, 2167, 2684, 3434, 4443, 4464, 4889, 5144, 5556, 5565, 5591, 5670, 5750, 5951
AlwNI CAGNNN|CTG 2838
ApoI Pu|AATTPy 483, 729, 847, 886, 897, 1028, 2810, 3521, 3703, 3710, 4221, 4551, 4618, 4671, 5021, 5116, 5367, 5451, 5985
AseI AT|TAAT 430, 2600, 4565
AvaI C|PyCGPuG 1877
AvaII G|G[AT]CC 309, 608, 980, 2184, 2415, 3993, 5697
BalI TGG|CCA 1911
BamHI G|GATCC 723
BanI G|GPyPuCC 1622, 2467
BanII GPuGCPy|C 830, 4465
BclI T|GATCA 1594, 2900, 2918, 2990
BfaI C|TAG 604, 1280, 1318, 1459, 2858, 2908, 3276, 3622, 3671, 4318, 4633, 4771, 5567, 5989
BglII A|GATCT 1953, 2924, 2985, 3179
BlpI GC|TNAGC 2683
BsaAI PyAC|GTPu 589, 3952, 4102, 4335
BsaBI GATNN|NNATC 22, 1771, 2905, 2923, 3034, 3974
BsaHI GPu|CGPyC 3127
BsaJI C|CNNGG 338, 537, 3440
BsaWI [AT]|CCGG[AT] 3459, 3863, 4239
BsiEI CGPuPy|CG 4126
BsiHKAI G[AT]GC[AT]|C 2855, 4465, 5710
BsiWI C|GTACG 817
BslI CCNNNNN|NNGG 542, 718, 2121, 2463, 3683, 4475, 5685
BsoBI C|PyCGPuG 1877
Bsp1286I G[GAT]GC[CAT]|C 830, 2855, 4465, 5710
BspDI AT|CGAT 2872
BspHI T|CATGA 3777, 4147, 5545
BspT107I(HgiCI) G|G[TC][AG]CC 1622, 2467
BsrDI GCAATGNN| 2404, 5841
BsrFI Pu|CCGGPy 3459, 3863, 4239
BsrI ACTGGN| 1187, 2546
BssKI |CCNGG 2084, 5057, 5132, 5260
BssSI C|TCGTG 3488
BstAPI GCANNNN|NTGC 4163, 5823
BstBI TT|CGAA 2807
BstF5I GGATGNN| 4188, 5778, 5883
BstNI CC|[AT]GG 5057, 5132, 5260
BstUI CG|CG 3439
BstXI CCANNNNN|NTGG 1356, 2770
BstYI Pu|GATCPy 723, 1953, 2924, 2985, 3179, 3669, 5633
BtgI C|CPuPyGG 338, 537, 3440
BtsI GCAGTGNN| 5836
Cac8I GCN|NGC 1972, 2115, 2834
Cfr10I [AG]|CCGG[TC] 3459, 3863, 4239
ClaI AT|CGAT 2872
DdeI C|TNAG 313, 1292, 1442, 1603, 1811, 2190, 2515, 2682, 2829, 4182, 5225
DpnI GA-CH3|TC 16, 722, 1252, 1339, 1417, 1593, 1952, 2548, 2729, 2873, 2899, 2917, 2923, 2935, 2984, 2989, 3028, 3139, 3178, 3303, 3397, 3668, 3984, 4036, 4125, 4143, 4294, 4976, 4983, 4990, 5383, 5632
DpnII |GATC 16, 722, 1252, 1339, 1417, 1593, 1952, 2548, 2729, 2873, 2899, 2917, 2923, 2935, 2984, 2989, 3028, 3139, 3178, 3303, 3397, 3668, 3984, 4036, 4125, 4143, 4294, 4976, 4983, 4990, 5383, 5632
DraI TTT|AAA 1697, 2344, 4628, 5096
EaeI Py|GGCCPu 1911, 3346
EcoNI CCTNN|NNNAGG 2121
EcoO109I PuG|GNCCPy 310, 981
EcoRI G|AATTC 2810, 4221, 5985
EcoRV GAT|ATC 788, 841, 2128, 4777
Fnu4HI GC|NGC 1919, 2101, 3441
FspI TGC|GCA 672
HaeIII GG|CC 1910, 3345, 3674, 3685, 3725, 5036, 5059
HhaI GCG|C 671
HinP1I G|CGC 671
HincII GTPy|PuAC 2510, 2577
HindIII A|AGCTT 1362, 5671
HinfI G|ANTC 167, 197, 300, 367, 495, 525, 821, 1332, 1560, 1797, 1815, 1931, 1987, 2519, 2755, 2825, 3095, 3163, 3202, 3229, 3248, 3280, 3330, 3388, 3411, 3492, 3505, 3826, 4052, 4064, 4678, 4899, 5128, 5502, 5892, 5993
HpaI GTT|AAC 2510
HpaII C|CGG 2084, 3458, 3862, 4238
Hpy188I TCN|GA 142, 442, 682, 1255, 1291, 1329, 1443, 1571, 1860, 2191, 2253, 2276, 2436, 2516, 2758, 2987, 3176, 3226, 3235, 3414, 3502, 3748, 3982, 4055, 4217, 4250, 4261, 4468, 5457, 5470, 5943
Hpy99I CG[AT]CG| 163, 393, 399, 3465, 5472
HpyCH4III ACN|GT 114, 1019, 1133, 1259, 1297, 2142, 3449, 4083, 4199, 4287, 4476, 5390
HpyCH4IV A|CGT 588, 1700, 1881, 3126, 3365, 3466, 3951, 4101, 4133, 4334, 4650, 4965
HpyCH4V TG|CA 346, 659, 756, 890, 974, 1387, 1472, 1616, 1937, 1973, 2116, 2133, 2386, 2698, 3053, 3692, 4358, 4927, 5778, 5836, 5973
KpnI GGTAC|C 1622
MboI |GATC 16, 722, 1252, 1339, 1417, 1593, 1952, 2548, 2729, 2873, 2899, 2917, 2923, 2935, 2984, 2989, 3028, 3139, 3178, 3303, 3397, 3668, 3984, 4036, 4125, 4143, 4294, 4976, 4983, 4990, 5383, 5632
MfeI C|AATTG 461, 2608, 3631
MscI TGG|CCA 1911
MseI T|TAA 43, 273, 429, 991, 1038, 1099, 1239, 1364, 1540, 1696, 1756, 2343, 2476, 2509, 2540, 2599, 3061, 3099, 3117, 3738, 4527, 4564, 4568, 4592, 4627, 4667, 5095, 5139, 5400, 5531, 5968, 6012, 6073
MslI CAPyNN|NNPuTG 1171, 1907, 5817
MspA1I C[AC]G|C[GT]G 3440
MspI C|CGG 2084, 3458, 3862, 4238
MwoI GCNNNNN|NNGC 516, 1893, 4163, 5564, 5823, 5885
N.BstNBI GAGTCNNNN|N 2830, 3393, 3831, 4904, 5133
NciI CC|[CG]GG 2084
NcoI C|CATGG 338, 537
NdeI CA|TATG 1267, 1305
NlaIII CATG| 337, 536, 1069, 2097, 2449, 3776, 4146, 4485, 4936, 5074, 5165, 5301, 5494, 5544, 5700, 5780, 5817, 5822, 6031
NlaIV GGN|NCC 723, 980, 1622, 2416, 2467, 3994, 4340
NsiI ATGCA|T 5779
NspI PuCATG|Py 2098, 2450, 5075, 5781, 5823
PacI TTAAT|TAA 4568
PaeR7I C|TCGAG 1877
PciI A|CATGT 2450
PmlI CAC|GTG 3952, 4102
PpuMI PuG|G[AT]CCPy 310, 981
PshAI GACNN|NNGTC 3253, 4258
PsiI TTA|TAA 129, 1746, 3834, 5427, 6089
PspGI |CC[AT]GG 5057, 5132, 5260
PstI CTGCA|G 1473
PvuI CGAT|CG 4126
RsaI GT|AC 69, 333, 466, 816, 1482, 1529, 1621, 3461, 3802, 4473, 5561, 5786
SacI GAGCT|C 4465
SacII CCGC|GG 3440
Sau3AI |GATC 16, 722, 1252, 1339, 1417, 1593, 1952, 2548, 2729, 2873, 2899, 2917, 2923, 2935, 2984, 2989, 3028, 3139, 3178, 3303, 3397, 3668, 3984, 4036, 4125, 4143, 4294, 4976, 4983, 4990, 5383, 5632
Sau96I G|GNCC 309, 608, 980, 2184, 2415, 3675, 3686, 3726, 3993, 5036, 5060, 5697
ScaI AGT|ACT 1530
ScrFI CC|NGG 2084, 5057, 5132, 5260
SfcI C|TPuPyAG 305, 1473, 2952
SgrAI CPu|CCGGPyG 4240
SmlI C|TPyPuAG 857, 1877, 2850, 3309, 3822, 4347
SspI AAT|ATT 2561, 4665, 5081, 5181
StyI C|C[AT][AT]GG 338, 537
Taqƒ¿I T|CGA 107, 161, 369, 561, 843, 984, 1047, 1876, 2043, 2550, 2788, 2806, 2871, 2883, 2994, 3146, 3199, 3516, 3923, 3934, 4018, 4034, 4096, 4779, 5582
TfiI G|A[AT]TC 167, 197, 300, 367, 495, 821, 1332, 1560, 1797, 1815, 1931, 1987, 2519, 2755, 3095, 3163, 3229, 3280, 3330, 3411, 3505, 4052, 4064, 4678, 5892, 5993
TliI C|TCGAG 1877
Tsp45I |GT[CG]AC 420, 716, 3490, 4290, 4490
Tsp509I |AATT 220, 320, 427, 460, 482, 728, 846, 885, 896, 964, 989, 1004, 1027, 1097, 1447, 1508, 1542, 1580, 2587, 2601, 2607, 2672, 2809, 2913, 3151, 3168, 3520, 3630, 3702, 3709, 3735, 3751, 4220, 4508, 4529, 4550, 4566, 4617, 4670, 4795, 4859, 4876, 5020, 5049, 5115, 5285, 5349, 5366, 5398, 5450, 5519, 5933, 5965, 5984
TspRI NNCA[CG]TGNN| 1134, 5836
XhoI C|TCGAG 1877
XmnI GAANN|NNTTC 1857, 3524, 4094, 4201


Click here to view TAIR data

>AT4G14540 genomic sequence (4047-4532,) length:6102
TTCCTTATCC TGAAACTGAT CTTCATCCAC AAATCCATAC TTTTTTAACT 
50
TCTCTACAAT CTTCTCCATT GTACTACTAC TCCCACTACC ACCACCAACA 
100
TCACCACTTC GACTACTGTT CTCACCACTT ATAACCCCTA AATCCGAAAA 
150
TCTCTCGTCT TTTCGACGAT TCAACACTAC CTTTGAAGGT CTAAACTGAT 
200
TCTGCTTCTG TGTTCTATTC CAATTCTCAT TCCTACTGCT ACTACTACTG 
250
CTACTACCTT CACACGATAA TCGTTTAACA TTTTTCATAA AAGAGAAACC 
300
GAATCTATAG GACCTGAGTG AAATTGATGA ACTTGTACCA TGGAACTTGC 
350
AGAAAGAACT TCCCAGAGAA TCGACAAACT TCGCCGAAGT AGTCGTCGTC 
400
GTCGTCATTG GGCAAAAATG GTGACTTGAA TTAATCGCCA Tttccgacag 
450
aaaatactct caattgggta ctctcaacaa aaaaatttga cctttgattc 
500
cttcagctac gcaaacgaag ctcctgactc tgttatccat ggcgggggaa 
550
agaataagat gttcgagatg attagagggt tgtttggata cgtggtttat 
600
cgtaactagg accaccacaa agagcgtatt atagagaaac ataacttatt 
650
atcgctaaaa tgcacttata gtgcgcatct tgtcagaaat aaaacgattt 
700
caataacaca cgccttgtga cgggatccaa attttgtcag tcaaaagcag 
750
ttacttatgc agagaaggga agagagagta gaaaatagat atcttttgcg 
800
tgagcctctc tttgcccgta cgattcttcg ggctctatga gatatcgaat 
850
tttcttctca aggttagatt tttcgctttc tactaaaatt ttgcaaaaat 
900
tctcattttg ttttgttgtt gaagatttcg ttacaagttc cttttttttt 
950
tacttctcgg tgtaaaatta gaacttgcag ggacctcgat aattaactga 
1000
tgtctaattt tatcgtggaa cggttgagaa ttttggtgat taagggtttc 
1050
gattttgatt ttgggtttat catgtttttg aaaaagtaga gggaaaaaaa 
1100
ttaagacttt tgatttttac gatgttgggt ttcactgtaa atgaggttct 
1150
aatggcggag taataacata agtgtgtgtt tcatttactg gtttagtgat 
1200
ttttcaaatg gtcgtttgtc taatcaaaaa gatatttctt ttaagttttt 
1250
ggagatcaga cagttacata tgtttatgtt gctagttctt gtctgagaca 
1300
gttacatatg tttatgtagc tagttcttgt ctgaatcgtg gatcaatgcc 
1350
catatctctg gaagcttaat gtgattttct ttgagaagtg caacatatat 
1400
cttcttgtat cttgttgaga tcacttcagg ttgtgtgatt ttctcagaaa 
1450
ttattgacct ctagtcttgt tactgcagtt tcagtacctt ttttgtttgt 
1500
ttgatgtaaa attagcagtt tcagttttga gtactttgct cttaattttg 
1550
tctcttggtt gattcctttt ctctgatgta gaattgagtg ggctgatcag 
1600
taactaagtt cttcttatgc aggtaccata taaggttcaa tgctatataa 
1650
cttcaatcta tttagccgtc aaaacatttt atatctgctt cgttgcttta 
1700
aacgttatgt tttctctatg acctatgacc tgcgtttata ctgctttata 
1750
atctttatta aggcttgatg gttatcattt ctggttgcgg attttatgat 
1800
tcatccttca acttagaatc tcctgtgttt ttttcaggta acagataaac 
1850
acgaATGTTT TCAGAAGTAG AAATGGCTCG AGACGTGGCT ATATGTGCCA 
1900
AACACTTGAA TGGCCAATCG CCGCACCAAC CGATTCTATG CAGACTACTC 
1950
CAAGATCTAA TACACGAGAA AGCGTGCAGG GAACACGGAT TCTATCTCGG 
2000
CATCACCGCT CTAAAAAGCA TCGGTAACAA CAAGAACAAC AACATCGACA 
2050
ACGAAAACAA TCATCAAGCA AAAATCCTCA CATTCCCGGT GTCCTTCACA 
2100
TGCCGCACAT TCTTGCCTGC AAGAGGAGAT ATCTTGCAAG GGACTGTAAA 
2150
AAAAGTGTTG TGGAACGGAG CTTTTATCAG GTCAGGACCA CTCAGATACG 
2200
CATACCTCTC ACTCTTGAAA ATGCCACATT ATCATTATGT CCACTCACCA 
2250
TTGTCGGAGG ACGAGAAACC GCATTTTCAG AAAGACGACC TCTCAAAGAT 
2300
TGCTGTTGGA GTTGTTGTGC GGTTTCAGGT GTTGGCTGTG CGGTTTAAAG 
2350
AGAGACCACA CAAGAGAAGA AACGACTATT ATGTTCTTGC AACTTTGGAA 
2400
GGCAATGGTT CATTTGGTCC CATCTCTCTT ACAGGGTCAG ATGAGCCATA 
2450
CATGTAAccc aaacaaggca ccaaaagtta aaagtcttta gatacttttt 
2500
tgcttttagg ttaacctcag attcgttggg gttgtttcgt gttaaactgg 
2550
atcgacaaga aatatttgta aacaaagttg acagaaccaa ttacattcta 
2600
ttaatttcaa ttggtcaata ccgacagagt tacatattga tataatacta 
2650
atacatacaa aagcatataa gaaaattagt tgctgagcta tcttcaaact 
2700
gcatcaatgg tgtggtaact cattgaaaag gatcatcttt catctaaacc 
2750
tctgtgaatc agaccacaga tttggatttt tcatcaccat cgagacatct 
2800
tccatcttcg aattcatcaa aagacgagtc tcagcaggct ctggatactc 
2850
ttgagtgctC TAGTAATCGC CATCGATCAA ACCCTCGAAA TCTATGAGTT 
2900
GATCAAAATC TAGGAATTGA TCAAGATCTA TCTCTTGATC TTCCAAGTTT 
2950
CCTGTAGGTT TGTCGTTACT CTCAAAAATC GCCAAGATCT GATCATCGAA 
3000
TACAACCATC TCCGTTTCTT CTTTGAGACG ATCATCATCA GGAACGCCAA 
3050
AAGTTGCAGA ACTTAACTGA AGATTTAGGG TTTCGTGTGA AACAAGATTC 
3100
TTAATCTTGA TGTCGTTGTT AATCTTGACG TCCTCTTGAT GATCTCTTCG 
3150
ATAATTATTC ACAGATTCCA ATTCCTTCAG ATCTCTCAAC ATCGTAGACA 
3200
TCGACTCAAT CGCTTTTCTC AACTCCTCCG AATCCTCCGA TTTAGCAAGA 
3250
CTCTCGTCTT CCACCATaac tctaacccta gattctcttt acgaacaaga 
3300
ccctgatcct tgaggaaagc ggaaacaaca gaatcaacag aggaatggcc 
3350
gaaggagtag aaggagacgt gagagttgga agaacaagga gtcgtcaaga 
3400
tcgcaacctg tgaatcggag gagagaagac ataatagctc cgcggcttta 
3450
ctgtaaagac cggtacgacg tttggagaaa caaacggctc gtgactcttt 
3500
cttctgaatc ttctcaatcg aaattcttct ctttagtcct cccattctgc 
3550
tttctttgat ttcacagaga ttttgaggga cactacctct ctctctttat 
3600
agatagtgta tgtaacaaga aacctagaaa caattgtata tataaaaatg 
3650
tcggtggttt tataggaggg atctaggccc gtatcaggcc cattgcaaga 
3700
ggaaattcaa aattttgtct tcttttggcc caaatcaatt taataaaatc 
3750
tgaattaggg gttttgtttt ttgatttcat gatataaacg acaaaaacca 
3800
aaagtacata tataaccaga actcaagagt cttttataat aaaggcaaac 
3850
cgaaaaaaca gaaccggtta tcaagtctct ctcttccttt tctatccaaa 
3900
taacatccac ttgtaataat cttatcgaca aacaatcgac ctataactac 
3950
ccacgtgtca tcacgatacg attattatcc tctctgatcc aacggaccca 
4000
aaacatctat ctctctttct cgaccttttg tctcctcgat ctaaagATGG 
4050
CGGATTCGGA CAACGATTCA GGAGGACACA AAGACGGTGG AAATGCTTCG 
4100
ACACGTGAGC AAGATAGGTT TCTACCGATC GCTAACGTTA GCAGGATCAT 
4150
GAAGAAAGCA CTTCCTGCGA ACGCAAAAAT CTCTAAGGAT GCTAAAGAAA 
4200
CGGTTCAAGA GTGTGTATCG GAATTCATAA GTTTCATCAC CGGTGAGGCT 
4250
TCTGACAAGT GTCAGAGAGA GAAGAGGAAG ACAATCAACG GTGACGATCT 
4300
TCTTTGGGCG ATGACTACGC TAGGGTTTGA GGACTACGTG GAGCCTCTCA 
4350
AGGTTTATCT GCAAAAGTAT AGGGAGGTGG AAGGAGAGAA GACTACTACG 
4400
GCAGGGAGAC AAGGCGATAA GGAAGGTGGA GGAGGAGGCG GTGGAGCTGG 
4450
AAGTGGAAGT GGAGGAGCTC CGATGTACGG TGGTGGCATG GTGACTACGA 
4500
TGGGACATCA ATTTTCCCAT CATTTTTCTT AAttgtaaaa tgataaaagc 
4550
aaattttcat ttttattaat taatgatata tatatatata tgtttaactt 
4600
ttagtataat gtttacagaa tttttttttt aaaactaggt tcaacccact 
4650
aacgtaacaa aataaatatt aaatttatga ttcgtaaggt tagggtgtta 
4700
cttttttcaa aaaaaaagaa taaaagaagg ttagggtgtt tattcgtgaa 
4750
agatgaaagt aacaaaagta aactaggata tcgaagttta tggttgaatt 
4800
aggaggaaaa atcaaatgag agagacatac atttttttta gagtaaaatg 
4850
tttcctaaaa aattgtagtg ggaatataat tatagcatca agctaaaaag 
4900
agtcattgaa aaactttttc tactttgatg cagggaacat gagatgtaat 
4950
caagggcata tctaaaacgt aacctttgat ctttgatctt tgatcttttt 
5000
tttttttttt tttttttttg aaattcagga ggttctgggc cgaagcccgt 
5050
aattcctcca ggcccgaaac cacagcatgt aatattagtt tttcttttaa 
5100
agtgttgtga tgcgaaaatt tcatatttga gtccaggttt ttaagagctt 
5150
gggttttcca ttagtccatg ttatgccaca aatattcaaa gattttttct 
5200
tacaagcaat actcaaatat caaaactaag tttctatcaa aaaactaaac 
5250
aaaacatcag ccaggtaaaa tcaggaaaaa ataaagaatt atcaacaaat 
5300
accatgacta caataaccaa actgctttcc attattgttt ttgtcaagca 
5350
aattgtattc aacattgaat ttcaaaacag agaagatcat acggtgtaga 
5400
attaaaaaca agattgaaac gatacattat aaataacgac aaaggcttga 
5450
aaatttatca gataggaagt tccgacgaac ctaaatgaaa gtctccatga 
5500
cagactccat attgaagact aatttcaaaa gattaaagag aaactcatga 
5550
taataatagc tcgtacagct agtgcttctt ccatcgaagt agagctttca 
5600
agaaatcact ccaaaaagga gttgtatagg aaggatctct ccaaaacatt 
5650
ccaaagcaat acaataggag aagcttttac cctttttggg tcgtgaagga 
5700
ccatgctttg tgctctgttc tcacaacatt gagaactttg tagtagagcg 
5750
aagctggaaa agagttgtgg cgttgtggat gcatgtggta ctcttatgcc 
5800
aaacctcgta aacacacgca tgacatgctt gaagcagtgc aatggagatg 
5850
tcattgcttg tagaagttgt tgatgacagg cggatggtgc tggaatcatt 
5900
caataggtag ggttgtaggc aacaacttta ccataatttt gtttcagatt 
5950
tgagctgaaa atgaataatt taagtgcaag tggtgaattc ctagattctc 
6000
cctcaatgcc acattaaagc aagtttgttc aacatgacat ctcaaaaaaa 
6050
atcctatcaa tagtagggtt gaggttaaaa ataaagagtt ataaactgcg 
6100
aa
6150