|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT4G18390 | TCP2 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) |
>AT4G18390.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BsrBI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoRI, FauI, FokI, FseI, FspI, HaeIII, HgaI, HindIII, HphI, I-CeuI, I-SceI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, MspA1I, N.BstNBI, NaeI, , NcoI, NdeI, NgoMIV, NheI, NlaIII, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PshAI, PsiI, PspGI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AciI | C|CGC | 195, 852 |
| AgeI | A|CCGGT | 62 |
| AluI | AG|CT | 112, 250, 271, 294, 453, 466, 493, 595, 841, 1035 |
| AlwNI | CAGNNN|CTG | 368 |
| ApaLI | G|TGCAC | 995 |
| ApoI | Pu|AATTPy | 549, 681 |
| AvaI | C|PyCGPuG | 643 |
| AvaII | G|G[AT]CC | 159, 892, 975 |
| BanI | G|GPyPuCC | 835 |
| BclI | T|GATCA | 237 |
| BfaI | C|TAG | 243, 468, 480 |
| BglII | A|GATCT | 9 |
| BsaAI | PyAC|GTPu | 164 |
| BsaBI | GATNN|NNATC | 713 |
| BsaHI | GPu|CGPyC | 835 |
| BsaJI | C|CNNGG | 506 |
| BsaWI | [AT]|CCGG[AT] | 62, 118, 179, 553, 564 |
| BsiEI | CGPuPy|CG | 326 |
| BsiHKAI | G[AT]GC[AT]|C | 995 |
| BsoBI | C|PyCGPuG | 643 |
| Bsp1286I | G[GAT]GC[CAT]|C | 995 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 835 |
| BsrDI | GCAATGNN| | 584 |
| BsrFI | Pu|CCGGPy | 62, 71, 578, 777 |
| BssKI | |CCNGG | 91 |
| BstAPI | GCANNNN|NTGC | 1002 |
| BstF5I | GGATGNN| | 588, 1055 |
| BstYI | Pu|GATCPy | 9, 561 |
| Cac8I | GCN|NGC | 1002 |
| Cfr10I | [AG]|CCGG[TC] | 62, 71, 578, 777 |
| DdeI | C|TNAG | 292, 456 |
| DpnI | GA-CH3|TC | 8, 128, 212, 221, 236, 447, 515, 560, 707 |
| DpnII | |GATC | 8, 128, 212, 221, 236, 447, 515, 560, 707 |
| DrdI | GACNNNN|NNGTC | 175, 900 |
| EcoO109I | PuG|GNCCPy | 893 |
| EcoRV | GAT|ATC | 771 |
| Fnu4HI | GC|NGC | 273, 369, 843, 855 |
| HaeII | PuGCGC|Py | 835 |
| HhaI | GCG|C | 834 |
| HinP1I | G|CGC | 834 |
| HincII | GTPy|PuAC | 568, 653, 822 |
| HinfI | G|ANTC | 282, 338, 347, 783, 1010 |
| HpaI | GTT|AAC | 568 |
| HpaII | C|CGG | 61, 70, 91, 117, 178, 552, 563, 577, 776, 831, 837 |
| Hpy188I | TCN|GA | 291, 323, 350, 408, 450, 558, 705, 960, 1068 |
| Hpy99I | CG[AT]CG| | 35, 171 |
| HpyCH4III | ACN|GT | 169, 363, 980 |
| HpyCH4IV | A|CGT | 36, 163 |
| HpyCH4V | TG|CA | 994, 1003, 1055 |
| KasI | G|GCGCC | 835 |
| MboI | |GATC | 8, 128, 212, 221, 236, 447, 515, 560, 707 |
| MseI | T|TAA | 65, 263, 356, 545, 567, 635, 813 |
| MspI | C|CGG | 61, 70, 91, 117, 178, 552, 563, 577, 776, 831, 837 |
| MwoI | GCNNNNN|NNGC | 843, 1002 |
| NarI | GG|CGCC | 835 |
| NciI | CC|[CG]GG | 91 |
| NlaIV | GGN|NCC | 835, 892 |
| PmlI | CAC|GTG | 164 |
| PpuMI | PuG|G[AT]CCPy | 893 |
| PstI | CTGCA|G | 1004 |
| Sau3AI | |GATC | 8, 128, 212, 221, 236, 447, 515, 560, 707 |
| Sau96I | G|GNCC | 159, 892, 975 |
| ScrFI | CC|NGG | 91 |
| SfcI | C|TPuPyAG | 943, 1004 |
| SfoI | GGC|GCC | 835 |
| StyI | C|C[AT][AT]GG | 506 |
| Taqƒ¿I | T|CGA | 130 |
| TfiI | G|A[AT]TC | 282, 338, 347, 783, 1010 |
| TseI | G|C[AT]GC | 273, 369, 843 |
| Tsp45I | |GT[CG]AC | 166 |
| Tsp509I | |AATT | 83, 97, 204, 374, 404, 548, 637, 680, 905 |
| TspRI | NNCA[CG]TGNN| | 877, 999 |
Click here to view TAIR data
>AT4G18390.1 length:1098
ATGATTGGAG ATCTAATGAA GAATAACAAC AATGGCGACG TTGTGGATAA | 50 |
CGAAGTGAAC AACCGGTTAA GCCGGTGGCA TCACAATTCT TCCCGGATAA | 100 |
TTAGGGTTTC ACGAGCTTCC GGTGGTAAAG ATCGACACAG CAAAGTCTTG | 150 |
ACTTCTAAAG GACCACGTGA CCGTCGTGTC CGGTTATCAG TCTCCACCGC | 200 |
TCTTCAATTC TATGATCTTC AAGATCGGTT AGGTTATGAT CAACCTAGCA | 250 |
AAGCTGTTGA ATGGTTAATC AAAGCTGCTG AAGATTCAAT CTCTGAGCTT | 300 |
CCTTCACTCA ACAACACTCA TTTTCCGACC GATGACGAGA ATCACCAGAA | 350 |
TCAGACATTA ACAACAGTTG CTGCTAATTC CTTGTCTAAA TCTGCTTGTA | 400 |
GTAGCAATTC AGACACGAGC AAGAACTCTT CTGGTTTGTC TTTATCAAGA | 450 |
TCGGAGCTTA GAGATAAAGC TAGAGAGAGG GCTAGAGAGA GAACAGCTAA | 500 |
AGAGACCAAG GAAAGAGATC ATAACCACAC TTCGTTTACG GATTTGTTAA | 550 |
ATTCCGGTTC AGATCCGGTT AACTCAAACC GGCAATGGAT GGCTTCAGCT | 600 |
CCTTCTTCAT CTCCAATGGA GTATTTCAGT TCGGGTTTAA TTCTCGGGTC | 650 |
GGGTCAACAA ACCCATTTCC CTATTTCAAC AAATTCTCAT CCTTTCTCAT | 700 |
CAATCTCCGA TCATCATCAT CATCATCCTC ATCATCAGCA TCAAGAGTTT | 750 |
TCATTCGTTC CCGACCATTT GATATCACCG GCAGAATCCA ACGGCGGAGC | 800 |
ATTCAATCTT GATTTTAATA TGTCAACACC CTCCGGCGCC GGAGCTGCCG | 850 |
TCTCCGCCGC ATCAGGTGGT GGCTTCAGTG GTTTCAACAG GGGGACCCTT | 900 |
CAGTCCAATT CAACAAATCA GCATCAGTCA TTCCTCGCTA ATCTACAGAG | 950 |
GTTTCCAACA TCAGAAAGTG GAGGAGGTCC ACAGTTCTTA TTCGGTGCAC | 1000 |
TGCCTGCAGA GAATCACCAC CACAATCACC AGTTTCAGCT TTACTATGAA | 1050 |
AATGGATGCA GAAACTCATC AGAACATAAG GGTAAAGGCA AGAACTGA | 1100 |
>AT4G18390.1 longest ORF length:365
MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL | 50 |
TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL | 100 |
PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR | 150 |
SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA | 200 |
PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF | 250 |
SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL | 300 |
QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE | 350 |
NGCRNSSEHK GKGKN | 400 |