fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G18390 (TCP2)

Alias TCP2
TF Classification
FioreDBTCP (Click to show phylogenetic tree)
RARTFTCP
AtTFDBTCP
PlnTFDBTCP (v3.0), TCP (v1.0)
DATFTCP
TAIR short description TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2)
TAIR annotation "TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2" (TCP2); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (TAIR:AT1G30210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT4G18390.1 77
AT4G18390.2 64
Entry clone (w/o stop) RE_1003
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1903508: other metabolic processes ->positive regulation of nucleic acid-templated transcription
(P) 2000306: response to abiotic or biotic stimulus ->positive regulation of photomorphogenesis
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45962: other biological processes ->positive regulation of development, heterochronic
(P) 48366: developmental processes ->leaf development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9637: response to abiotic or biotic stimulus ->response to blue light
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR319a: 3'-TCCCTCGAGGGAAGTCAGGTT-5'
5'--3'

miR319b: 3'-TCCCTCGAGGGAAGTCAGGTT-5'
5'--3'

miR846: 3'-TAAGTTCGTGAAGTTAAGTTT-5'
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        cotyledon, leaf, sepal, petal, stamen, silique, similar to CR111

         serrated leaf (direct input), 
         abnormal stamen (direct input), 
         adventitious shoot formation (direct input), 
         abnormal seedling (direct input), 
         abnormal shaped silique (direct input), 
         short silique (direct input), 
         abnormal sepal (direct input), 
         abnormal petal (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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