fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G18390 TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2)

>AT4G18390.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 9
EcoRV GAT|ATC 771
HpaI GTT|AAC 568
PstI CTGCA|G 1004
StyI C|C[AT][AT]GG 506


Click here to view TAIR data

>AT4G18390.1 length:1098
ATGATTGGAG ATCTAATGAA GAATAACAAC AATGGCGACG TTGTGGATAA 
50
CGAAGTGAAC AACCGGTTAA GCCGGTGGCA TCACAATTCT TCCCGGATAA 
100
TTAGGGTTTC ACGAGCTTCC GGTGGTAAAG ATCGACACAG CAAAGTCTTG 
150
ACTTCTAAAG GACCACGTGA CCGTCGTGTC CGGTTATCAG TCTCCACCGC 
200
TCTTCAATTC TATGATCTTC AAGATCGGTT AGGTTATGAT CAACCTAGCA 
250
AAGCTGTTGA ATGGTTAATC AAAGCTGCTG AAGATTCAAT CTCTGAGCTT 
300
CCTTCACTCA ACAACACTCA TTTTCCGACC GATGACGAGA ATCACCAGAA 
350
TCAGACATTA ACAACAGTTG CTGCTAATTC CTTGTCTAAA TCTGCTTGTA 
400
GTAGCAATTC AGACACGAGC AAGAACTCTT CTGGTTTGTC TTTATCAAGA 
450
TCGGAGCTTA GAGATAAAGC TAGAGAGAGG GCTAGAGAGA GAACAGCTAA 
500
AGAGACCAAG GAAAGAGATC ATAACCACAC TTCGTTTACG GATTTGTTAA 
550
ATTCCGGTTC AGATCCGGTT AACTCAAACC GGCAATGGAT GGCTTCAGCT 
600
CCTTCTTCAT CTCCAATGGA GTATTTCAGT TCGGGTTTAA TTCTCGGGTC 
650
GGGTCAACAA ACCCATTTCC CTATTTCAAC AAATTCTCAT CCTTTCTCAT 
700
CAATCTCCGA TCATCATCAT CATCATCCTC ATCATCAGCA TCAAGAGTTT 
750
TCATTCGTTC CCGACCATTT GATATCACCG GCAGAATCCA ACGGCGGAGC 
800
ATTCAATCTT GATTTTAATA TGTCAACACC CTCCGGCGCC GGAGCTGCCG 
850
TCTCCGCCGC ATCAGGTGGT GGCTTCAGTG GTTTCAACAG GGGGACCCTT 
900
CAGTCCAATT CAACAAATCA GCATCAGTCA TTCCTCGCTA ATCTACAGAG 
950
GTTTCCAACA TCAGAAAGTG GAGGAGGTCC ACAGTTCTTA TTCGGTGCAC 
1000
TGCCTGCAGA GAATCACCAC CACAATCACC AGTTTCAGCT TTACTATGAA 
1050
AATGGATGCA GAAACTCATC AGAACATAAG GGTAAAGGCA AGAACTGA
1100

>AT4G18390.1 longest ORF length:365
MIGDLMKNNN NGDVVDNEVN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL 
50
TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL 
100
PSLNNTHFPT DDENHQNQTL TTVAANSLSK SACSSNSDTS KNSSGLSLSR 
150
SELRDKARER ARERTAKETK ERDHNHTSFT DLLNSGSDPV NSNRQWMASA 
200
PSSSPMEYFS SGLILGSGQQ THFPISTNSH PFSSISDHHH HHPHHQHQEF 
250
SFVPDHLISP AESNGGAFNL DFNMSTPSGA GAAVSAASGG GFSGFNRGTL 
300
QSNSTNQHQS FLANLQRFPT SESGGGPQFL FGALPAENHH HNHQFQLYYE 
350
NGCRNSSEHK GKGKN
400