fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT4G36900 DEAR4, RAP2.10 DREB AND EAR MOTIF PROTEIN 4, related to AP2 10 (.1)

>AT4G36900.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvaI, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstNI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DdeI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, HpyCH4V, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MspA1I, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SpeI, SphI, SspI, StuI, StyI, SwaI, Taqƒ¿I, TliI, TseI, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 195
AccIII(BspMII) T|CCGGA 567
AluI AG|CT 258
AseI AT|TAAT 475
AvaII G|G[AT]CC 231
BalI TGG|CCA 20
BsaAI PyAC|GTPu 448
BsaJI C|CNNGG 23, 228
BsaWI [AT]|CCGG[AT] 567
BsiHKAI G[AT]GC[AT]|C 362
BslI CCNNNNN|NNGG 90
Bsp1286I G[GAT]GC[CAT]|C 362
BspEI T|CCGGA 567
BspHI T|CATGA 441
BssKI |CCNGG 254
BstF5I GGATGNN| 102, 373
BstUI CG|CG 195
BstYI Pu|GATCPy 158
BtgI C|CPuPyGG 23
Cac8I GCN|NGC 198
DpnI GA-CH3|TC 157, 482, 528, 563
DpnII |GATC 157, 482, 528, 563
DraI TTT|AAA 549
EaeI Py|GGCCPu 20
EcoO109I PuG|GNCCPy 232
Fnu4HI GC|NGC 54, 189, 327, 348, 384
HaeIII GG|CC 19
HhaI GCG|C 194
HinP1I G|CGC 194
HincII GTPy|PuAC 33
HinfI G|ANTC 401
HpaII C|CGG 38, 254, 267, 566
Hpy188I TCN|GA 226, 576
Hpy99I CG[AT]CG| 64
HpyCH4III ACN|GT 24, 48, 276, 307
HpyCH4IV A|CGT 430, 447
MboI |GATC 157, 482, 528, 563
MscI TGG|CCA 20
MseI T|TAA 246, 474, 513, 548
MslI CAPyNN|NNPuTG 28, 214, 431
MspI C|CGG 38, 254, 267, 566
MwoI GCNNNNN|NNGC 60, 198, 381
NciI CC|[CG]GG 254
NlaIII CATG| 440
PpuMI PuG|G[AT]CCPy 232
Sau3AI |GATC 157, 482, 528, 563
Sau96I G|GNCC 231
ScrFI CC|NGG 254
SnaBI TAC|GTA 448
TfiI G|A[AT]TC 401
Tsp45I |GT[CG]AC 273, 279
Tsp509I |AATT 555


Click here to view TAIR data

>AT4G36900.1 length:591
ATGGAGACGG CGACTGAAGT GGCCACGGTG GTGTCAACTC CGGCGGTTAC 
50
GGTTGCGGCG GTGGCGACGA GGAAGAGAGA TAAGCCGTAT AAAGGGATAA 
100
GGATGAGGAA GTGGGGGAAG TGGGTGGCGG AGATAAGAGA GCCTAATAAA 
150
AGGTCAAGGA TCTGGCTTGG CTCTTACTCT ACTCCTGAAG CGGCGGCGCG 
200
TGCTTACGAC ACGGCGGTGT TTTATCTCCG AGGTCCTTCT GCTCGGCTTA 
250
ACTTCCCGGA GCTTTTAGCC GGAGTGACGG TGACGGGAGG AGGCGGAGGA 
300
GGAGTGAACG GTGGTGGAGA TATGTCGGCG GCGTATATAA GGAGAAAAGC 
350
GGCGGAGGTT GGAGCACAAG TGGATGCGTT AGAAGCGGCG GGGGCGGGAG 
400
GGAATCGTCA TCATCATCAT CATCAACATC AACGTGGTAA TCATGATTAC 
450
GTAGATAATC ATAGTGATTA TCGTATTAAT GATGATCTTA TGGAGTGTAG 
500
TAGTAAAGAA GGGTTTAAGA GGTGTAATGG ATCGTTGGAA CGGGTTGATT 
550
TAAACAAATT ACCCGATCCG GAAACTTCAG ATGACGATTA G
600

>AT4G36900.1 longest ORF length:196
METATEVATV VSTPAVTVAA VATRKRDKPY KGIRMRKWGK WVAEIREPNK 
50
RSRIWLGSYS TPEAAARAYD TAVFYLRGPS ARLNFPELLA GVTVTGGGGG 
100
GVNGGGDMSA AYIRRKAAEV GAQVDALEAA GAGGNRHHHH HQHQRGNHDY 
150
VDNHSDYRIN DDLMECSSKE GFKRCNGSLE RVDLNKLPDP ETSDDD
200