fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G01310 APTX, bHLH140 APRATAXIN-like (.1)

>AT5G01310.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, NotI, PacI, SacI, SmaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 8697
BglII A|GATCT 3903, 4283, 6370, 7506
EcoRI G|AATTC 1781, 2049, 5001
EcoRV GAT|ATC 6012, 7156
HindIII A|AGCTT 549, 2860, 5496, 5736, 5925, 6180, 6238, 6570
HpaI GTT|AAC 1772, 5370, 5721
KpnI GGTAC|C 1021
NcoI C|CATGG 720
NdeI CA|TATG 1214, 2287
NheI G|CTAGC 775
PstI CTGCA|G 5614, 7077
PvuII CAG|CTG 2355, 5617, 6648, 8209
SalI G|TCGAC 699
SpeI A|CTAGT 8396
StyI C|C[AT][AT]GG 720, 5178, 6546, 7151, 7479
XbaI T|CTAGA 2231, 2979, 4793, 5562, 7034


Click here to view TAIR data

>AT5G01310 genomic sequence (4000-4501,4921-5198,5364-6235,6313-6910,6996-7166,7339-7656,) length:9156
TTTGCTTCAG GAAATAAGAG AGATCATTCG TCTCCCAATG TACGCTGACC 
50
GCATTCGAAA TGATAGTCAA GCTGCCCGCC GCCGGTAGag attacatttt 
100
tcaattttgt ttagtagtaa tacactagaa cgaactaata attgttttgg 
150
gcggtttctc ttctctcaca cttgtacagc taaataatct acatggttat 
200
acacattaca tctagtttgt ttcccaacgg aatttgaaac tagaattatt 
250
tcattgataa tcctcaatac gtgatatgga attattaact atgatacata 
300
tccaacggtg ttatgactat aacgacgaac gacatattTT AGGCCAAACA 
350
CGTCAAGATG GCTTCTCCTA GCACGTGCCC TTCAATTGCG ATCAGCAATC 
400
TCTCTTTCGT CACctagctc atattcagaa caactattta taaaaaaaag 
450
tactacataa agtactacat atcattcaaa tcagatagga aaataataaa 
500
acgatgtagt acCGTGTGAC CAATCTTGGG TTTATCATCG AGAGCAAAAA 
550
GCTTGAACTG AAAACGGTGA CCGTGACTAG GTAAGAGAGG TCCACGCCAT 
600
CCCGGAATCT TGTGATCGTT GTTCCCTTCC CGAATACCGG TAGTCTGATC 
650
CTCATTGCCG GAATATCCTT CCGGTAGGCC TTTCATCTCT GGTGGTATGT 
700
CGACGACAAC CCACACCGTC CATGGCACCA GCGGGCCACT AGGATCAGGC 
750
GCATCGATGT CTTCCACCAC CAAAGCTAGC GTTTTTGTAC CTTCTGGAAC 
800
GTTGTACcta caccatatca acattcttac taattcaatg caatcctttg 
850
ggtcggtcaa taaaccacaa aataattaaa aaatggaaac atgttacttc 
900
aaacagaaaa aaacaaacaa ctaggaagcc ttgtgaattg tgataattaa 
950
caaatcgaca aaattaataa tctctgtttc agcatcatga atcaaagtca 
1000
taaataaaga gcgatcgatc ggtacCATTC AAGAGGAGGA GAGATGTCTT 
1050
TCTTAACACC TTGACCTGCC ATCGTATACT TTCTCGGCAA CTTCCCATCG 
1100
TTGTCTATCG TCGGCGAAAC CAGCCTCAAC TCCTCACTCG ACATtccctt 
1150
ttacttttat gctatttctt acttagtttt atcacaaaga gtctcttctt 
1200
ttctactttc gtacatatga atgctctttt cgtgtttgtt actgatttgt 
1250
atggatcgcc tatgtgtaga aacaacgcca cgtgacggtc ttgaatgaca 
1300
cttggcgtca tgattgacac acggcgtcat aggaaatctg gcgaagacct 
1350
gtgtttgagc acaactctat attgggcttt attgggccta aattgtattt 
1400
tttcctctct actatattag cctgtctcgt tcttttttaa atcacgttat 
1450
cttattatta aaggaccact taacagtata ctaattattg ttttaacaat 
1500
tcccaccaaa aaaataatta ttgccttaac aataaaacaa agataatttt 
1550
aatataaatt aaatttgttt aattttaaaa ttacaataaa agatatttct 
1600
tattttataa acaaaaactc ttctcatctt tttttcttct attttttaat 
1650
ttattaaata agaatatcta aattaactac cttctaacta aaattaaagt 
1700
gatttccatg taatatttat caattttgaa gtcatagtag gatgctctaa 
1750
cgtgagccgt tttaaccaat cgttaacaaa gaattcgtct attaagacat 
1800
aaccatgatc aagtccgatg aatctaatag acatgttatc cggtttgcgt 
1850
tccatgacag aatatagcca attgtctata tcattgtttc tatttaagta 
1900
tacgttcatg acatctggtg tgttgcatag gtcaaacacg cgcgatagtt 
1950
caaggaaagt gcgttagtga tgaccacgac acaatactgc actttgtttt 
2000
catatcggga tgctccaagc tgagtcacta tagccattta ctgtcaaaga 
2050
attcgtccat aaaacaatat ttgtgatcaa gacggatcaa cataacatgc 
2100
atcaacttac tattaaaatt taagagtaag ttaaagaaaa tgttaaaaat 
2150
ttcttaggtt ggcccattaa attatattca aattaattct ttatttttca 
2200
cattatatat taaatctaat agaaatttat tctagattcg ccattgccgt 
2250
gtaatacatg aacaaatctt ttaaagatgg acatcgcata tgatctaccg 
2300
agatcatatc atgatagtct agctgcacaa taatccctta tacgaaatca 
2350
ttttcagctg gatgctttat aacacaacat tatattaggt tagtgagcct 
2400
atagctaact tgttttcttt tttcattaat cattgtttag atactcatag 
2450
taatgatttt gagataagta tctatttttc aaatgatata tcaattttaa 
2500
aaactcatta catcatgtca caacgttaaa agtataatta tacatatata 
2550
caaaaaattg tatgtatgtt acaaagaaaa cattgctaat tttactatgt 
2600
ctgagtcact atatgcggct ggaaagtacc aaaataaatg aagacagtaa 
2650
catgagtcca tcaccatcac caatatccaa aacttggctt tcacatttat 
2700
tttacttatg taactactat acctttattt atttattcat ttttaatcct 
2750
tagctttgtt gatctagttt ggcaaggtaa gtctataacg tccatcggcc 
2800
cgaatccttc tttttcattt atttcaaaat taacattttc ttcttcggaa 
2850
actatgacaa agctttttat gtaacccaaa aataacttaa ttacactgta 
2900
tatccttcta caaatttacc tatatcaaat tatgttatta tatattgtaa 
2950
tggcttttaa gagacaatgg agacattttc tagaacatag catttagtta 
3000
gatttgtaca agccatttca aaacttttca aaaacaaaat cagcaaataa 
3050
ccagttttgt ctttaaagaa tcgttctttc gtaggaacta gcaactggga 
3100
aggtgtaaat aggcgattta aggaaaatat ataattgaag aaaaataaat 
3150
caaatggtcg ggacttttta tctcacgtga aagtaacgtc gcatttactc 
3200
aacagtcgag acgacagtta catatttcac agttttaaac ttgtaagtta 
3250
aatttaacaa aaaaagaaat acaacttcaa acataatcgt tgttaagaaa 
3300
tttcatatat atcattcgtt tctatattaa tacaaaaaga atggtatggg 
3350
aaataaaata gaaagaatag aatgactaaa tcatggaaca tgacatgaat 
3400
acggtcactg tttcaagctc atgcgtcttt tccagcatag tagtagtagt 
3450
agttgttgtt gttgttgtta tccggtcttt tcaaagcaac gtacttccta 
3500
tttttcttac ttgtataaat ccacaattgt tttactcaaa aggaaaaaaa 
3550
aactatcaat tttgcaattt ggctagttaa ttcaatttat atctatttgt 
3600
tttaaaacta tatttgatct gtatgtgcaa tttatttact gatttgaggc 
3650
ttttgagcat atatatttag tgaatcgatt atagaatttg tattgaacaa 
3700
tgagagaaga acgaagacat ggattgggac aagtactata cataaacgtg 
3750
ggtaatgtgc tatgaaggta gttgtttgag aagacagtac gtagagtttg 
3800
agctgtaaga aatgattagg gtttgttttt cgtctgcact tcagtccaat 
3850
gttttcaccg aaccccacta ctacgtgaaa cccggagcct cacgtgctct 
3900
tgagatcttt ttaccactaa attaaccagt tcgtatgtaa ctatgtctat 
3950
atatatgtat aaccatatca tgtaacagtt ataaaccacg acaatcacaA 
4000
TGGATGATTT CAATCTTCGT AGCGAAAACC CTAATTCATC ATCCACCACT 
4050
TCCTCATCCT CTTCCTCTTT CCACCGTCAC AAGAGCGAAA CCGGAAACAC 
4100
AAAACGGTCA AGGTCAACGT CCACGTTATC GACGGACCCT CAGAGCGTGG 
4150
CGGCTCGCGA CAGACGGCAC CGAATTAGCG ACCGTTTCAA GATTTTACAA 
4200
AGCATGGTCC CTGGTGGTGC GAAGATGGAC ACTGTATCTA TGCTTGACGA 
4250
AGCCATTAGC TACGTCAAGT TCTTGAAGGC TCAGATCTGG TATCACCAAA 
4300
ACATGCTTCT CTTCATAAAC GACCACGAAA CTACATCATC TTGTACTTAC 
4350
TCTCCCGGCG CTGGAGAATT TGGACCGAAA CTCTTTGGTT ATGATGACGA 
4400
TTATGCCCCT ATAATGGACA CATATTCACA AGGCGTGCCA CTTACGGTTG 
4450
CGGACTCGAA GTATACGCCG TGGTTTGGTT CGGTTGATGA TGAGCAAGAA 
4500
Cgtgactcgt cctagtcgtt gccatatatg caacattatg tgatttacat 
4550
atccagaatc taccgtcttc cttattctcg caatacttag taactatagt 
4600
ttaaggatta tattatatgc gtctactata tatatctgag tgtatctaat 
4650
ttagagattg taatatacat gagtatgaga ctaattaacc tatagtattt 
4700
gtattgacgt atggataatc acttggaaac acgaaaaaga gagtatacaa 
4750
tactgtatat taattatgga ctttaaaaaa aaatcagcat tttctagaca 
4800
actttttcat tatcttcaca caaaaaatag ataaacatgg attaccaaaa 
4850
aaaagaaaaa agataaacag gcgttttaat gtaaatttgg gaaacagcac 
4900
gtcgttttca tgatgcgaag ACGTCACGTA TTTCAAATAC AGGCGTGCCA 
4950
CACGACACGC ATTACGAGGG CACTGCAATT GTATAATCGG AGAAACAGAG 
5000
GAATTCGCCG ATCAACGAGA GAAGATGGAA GTGCAAATTG AAGAATCTGG 
5050
TAAAAATCAA ACCTCTCCGG AATCAATTGA AGCAGACAAA GCGAAGCAGA 
5100
TAGTGGTGCT TCTGATTGGT CCACCAGGAA GCGGCAAATC GACGTTTTGT 
5150
GACACCGCAA TGCGTTCCTC TCACCGCCCT TGGTCTCGTA TCTGCCAGgt 
5200
ctctcttttt tatcgattgt tttatattgc acataagctg actgatgaaa 
5250
ttcttcaacg agactaagta tttacaaaac ttatgtaaga aatatctgtc 
5300
ttggttgcta tcaatgtaag aattttgtgt tggcttagat ttcatttgtt 
5350
taacttattt cagGACATTG TTAACAATGG CAAAGCTGGA ACAAAGGCTC 
5400
AGTGTTTAAA GATGGCTACA GATTCTCTTA GGGAAGGCAA GAGCGTCTTT 
5450
ATAGACAGAT GCAATCTTGA CAGGGAGCAA CGTTCAGAGT TTATTAAGCT 
5500
TGGTGGTCCT GAGTTCGAAG TTCATGCAGT GGTTCTGGAG CTTCCTGCTC 
5550
AGGTTTGTAT ATCTAGATCA GTTAAAAGAA CTGGTCATGA AGGAAATCTA 
5600
CAAGGTGGAA GAGCTGCAGC TGTTGTGAAT AAGATGCTTC AGAGTAAGGA 
5650
ACTTCCCAAA GTGAATGAAG GGTTTTCTCG GATTATGTTT TGTTACAGTG 
5700
ACGCTGATGT TGATAATGCT GTTAACATGT ATAACAAGCT TGGTCCAATG 
5750
GATACCCTTC CTTCTGGCTG TTTTGGCGAA AAAAAATTAG ATACTAAAAG 
5800
CCAACCCGGT ATAATGAAGT TCTTTAAGAA AGTCAGTGCT CTGCCTGCTT 
5850
CATCTTCTAA TGAAGCTACT AACACAACTC GGAAAGCTGA TGAAATGACA 
5900
GCAAATGTCC GAGTTTCGCC AGTCAAGCTT GGTTCTGCTG ATATTGTACC 
5950
TACACTGGCA TTCCCATCAA TTTCGACTGC GGATTTTCAG TTTGATCTTG 
6000
AAAAGGCTTC TGATATCATT GTGGAGAAAG CAGAGGAGTT CTTGTCTAAA 
6050
CTTGGGACTG CGCGTCTCGT CTTGGTGGAC TTGAGCCGCG GGTCAAAGAT 
6100
TCTATCTCTG GTCAAGGCTA AGGCTTCTCA GAAGAACATT GATTCAGCGA 
6150
AATTCTTCAC ATTTGTTGGG GACATAACTA AGCTTCGTTC TGAAGGTGGT 
6200
CTACACTGTA ATGTCATAGC TAATGCTACT AACTGgtaag cttccattat 
6250
tttcttgatc ttcagtatat acatcttcac tggatagcta attttgaaag 
6300
ctaaatgtgt agGCGGCTTA AACCTGGAGG TGGAGGTGTG AATGCAGCAA 
6350
TATTCAAAGC TGCTGGTCCA GATCTTGAGA CTGCGACAAG AGTACGAGCA 
6400
AACACTCTTC TTCCTGGAAA AGCCGTGGTA GTTCCTCTTC CTTCTACTTG 
6450
TCCATTACAC AATGCAGAAG GAATTACACA TGTCATACAT GTTCTAGGAC 
6500
CAAACATGAA CCCAAACCGA CCAGACAACC TTAACAACGA CTACACCAAG 
6550
GGGTGCAAAA CTCTCCGGGA AGCTTACACA TCTCTATTTG AAGGTTTTCT 
6600
ATCAGTAGTA CAGGATCAAT CGAAGTTGCC CAAACGAAGC AGTCAAACAG 
6650
CTGTGTCAGA TTCTGGTGAG GATATTAAGG AAGACTCTGA GAGAAACAAA 
6700
AAGTACAAAG GATCACAAGA TAAGGCCGTA ACTAATAATT TGGAATCAGA 
6750
GTCTCTGGAG GACACAAGAG GCAGTGGAAA GAAGATGAGT AAAGGATGGA 
6800
ACACATGGGC ATTGGCTCTC CACAGCATCG CGATGCACCC AGAGAGACAC 
6850
GAGAATGTCG TGCTTGAATA TTTAGACAAC ATCGTTGTCA TAAACGACCA 
6900
GTACCCAAAG gtaaaaaagt cttgatgctg atttataaat atagtatctt 
6950
tcttcatgtg acaaatgaca aataggattt ttcaactgag tttagGCGCG 
7000
GAAACACGTG CTAGTACTGG CGAGACAGGA GAGTCTAGAT GGGCTAGAAG 
7050
ATGTTCGCAA AGAGAATCTT CAACTTCTGC AGGAAATGCA CAATGTTGGT 
7100
CTGAAATGGG TTGATAGATT CCAGAACGAG GATGCATCTC TTATCTTCCG 
7150
CCTTGGATAT CACTCGgtac ttaagtcatc ctttacattc aaagcactgc 
7200
tgaattttct gtttcccctg agtgtagact tcagatttgc actttctgtt 
7250
cggtcgtttt agaggttaaa cctaagagtt cattagcaaa atcattgaaa 
7300
ttgatatgtt taacatacat tgagtttttc tctttcagGT TCCCTCGATG 
7350
CGACAACTAC ACTTACACGT TATAAGCCAA GACTTTAATT CAGATAGTTT 
7400
GAAGAACAAG AAACACTGGA ACTCTTTCAC GACCTCGTTC TTCCGTGACT 
7450
CAGTTGATGT ACTTGAAGAG GTCAACAGCC AAGGCAAGGC CAATGTGGCG 
7500
AGCGAAGATC TGTTGAAAGG TGAGCTGCGT TGCAATCGGT GTAGAAGCGC 
7550
ACACCCAAAT ATTCCAAAAC TTAAATCACA TGTCAGAAGC TGCCATTCTC 
7600
AATTTCCAGA CCATTTACTC CAAAACAATC GCCTTGTGGC TAGAGCAGAG 
7650
ACGTAGtagt tataacgacc ggttctattt cggttaggat ttttttttct 
7700
ttgttatcta attgttacgg gtaatatata ttgtgatttt ggttcagatt 
7750
cagtctctgt aaaaattcat ctctgttctt aggttttcat cttcttctgg 
7800
ttattaagtt tttgattttg ttcttgagtt ataaacttaa atggcaagaa 
7850
aacaagacag ataaaaagaa aaaaaagtca aataaatttt aacccaattg 
7900
agatgtaaga tggtttaaaa atgtttgatt taggttgaat caattgattt 
7950
ttttcggact ttacatataa gaaaaagcac aaatattgaa gaatattagg 
8000
gaaaaaggga attgtattac accatcaatg gtaatggtac agtacaacta 
8050
actggaaagt atcaaaagca attaaaacca acggtcgaaa attcgaaaat 
8100
tcgaacagaa aacaatctaa ttcaattgca aagaaacgag agatgcttga 
8150
gtcacactca agattctttt ctcttgcttC TACTGAGGAT TGGGAGGACG 
8200
ACCATTAGCA GCTGAGACGC GAGATCCCCA CTCAAGCAAC TCTTTGCTTG 
8250
TATCATCTTT GTGAACAATC ACTTCAATGA AACAAAGACT ATCTTTCTTC 
8300
TCCGTTGTCG CAGTCTTAAT CGCTTCCACT AACTCCTCCT CGTATCTCAC 
8350
ctgccaaaca caatgttact tcaacaccaa attcatacgt tagttactag 
8400
ttgtaatcat taattacCTT TGTGGTCCAG CATTTTCCTT CACCGTTATG 
8450
AATAGCATCG ACAAGACCAG TGTAGTTCCA GTTCTTGATA ACATTGTAAG 
8500
GACCATCATG AATCTCAACT TCAATGGTGT AGCCACCGTT GTTGATCAAG 
8550
AAGATGATCG CCTTCTGTCC GTTACGAATC ATCGTGGATA TGTCCTGAGC 
8600
AGTCACTTGG AAACTCCCAT CTCCAATGAA AGACAACACT CTCTTCTCCG 
8650
GGGTTGCTTG GGCGTATCCT AGAGTCGCAC CAACAGACCA ACCAATGGAT 
8700
CCATACTGCA TCTGAAACTC GTACctacaa tatagagaac aacttttctc 
8750
aaaacttgtg tttgtttcgc tattgtcaca atgttagaaa tgtcaaagat 
8800
tcagtttctt tgttagacac gtacCCACAT CCTTTAGGCA GCTTTAGCTT 
8850
CTGACAATTG AACCAAGAAT CACCAGTTTC AGCAATCACA GCGGTTTCAC 
8900
TAGAGAGCAT CTTCTGAATG TGTTGGAACA TTGCGTTGAC CCTCAATGGC 
8950
TCTCCTGGTT TGCATTTCAA TGGCTTACCT TCAGGTACAA AGATCCTCTC 
9000
ATAGTTCTCA TAAGCTGTCT CGTTACGCTT AACCCTCTTA GCCAACTCCC 
9050
TGAAGAAATC GCTCATCAGA ACGCAACCAA ACGTTGGACC ATTAGCCACA 
9100
ACGACTCGAT CAGGATGCAC AATTATTGCT TTTTCTTTCT TGAGGAGAAG 
9150
AGAGTA
9200