|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G11270 | OCP3 | overexpressor of cationic peroxidase 3 (.1) |
>AT5G11270.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssKI, BstAPI, BstEII, BstNI, BstUI, BstXI, BstZ17I, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, HpyCH4III, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, , NarI, NciI, NdeI, NheI, NotI, NruI, NspI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SphI, SspI, StuI, SwaI, Tth111I, XbaI, XmaI
| Name | Recognition sequence | Cut positions |
| AciI | C|CGC | 680, 728 |
| AluI | AG|CT | 253, 391, 552, 567, 595, 631, 690, 787, 883, 1039, 1051 |
| AlwNI | CAGNNN|CTG | 449, 743 |
| AvaI | C|PyCGPuG | 395 |
| BamHI | G|GATCC | 285 |
| BanII | GPuGCPy|C | 1040 |
| BfaI | C|TAG | 114, 612, 899 |
| BsaHI | GPu|CGPyC | 31, 602 |
| BsaJI | C|CNNGG | 11, 976 |
| BsaWI | [AT]|CCGG[AT] | 1056 |
| BsiHKAI | G[AT]GC[AT]|C | 1040 |
| BsoBI | C|PyCGPuG | 395 |
| Bsp1286I | G[GAT]GC[CAT]|C | 1040 |
| BsrFI | Pu|CCGGPy | 28 |
| BsrI | ACTGGN| | 451, 579 |
| BssSI | C|TCGTG | 176 |
| BstBI | TT|CGAA | 1000 |
| BstF5I | GGATGNN| | 250, 343 |
| BstYI | Pu|GATCPy | 285 |
| Bsu36I | CC|TNAGG | 812 |
| BtgI | C|CPuPyGG | 11 |
| Cac8I | GCN|NGC | 28, 1038 |
| Cfr10I | [AG]|CCGG[TC] | 28 |
| DdeI | C|TNAG | 550, 634, 702, 745, 811, 865 |
| DpnI | GA-CH3|TC | 284, 761, 918 |
| DpnII | |GATC | 284, 761, 918 |
| Fnu4HI | GC|NGC | 566, 630, 692, 738, 949 |
| HincII | GTPy|PuAC | 85 |
| HinfI | G|ANTC | 104, 185, 196, 777 |
| HpaII | C|CGG | 27, 1055 |
| Hpy188I | TCN|GA | 101, 107, 221, 339, 866 |
| Hpy99I | CG[AT]CG| | 32, 55, 67, 603 |
| HpyCH4V | TG|CA | 586, 846 |
| MboI | |GATC | 284, 761, 918 |
| MseI | T|TAA | 303, 570, 618 |
| MspA1I | C[AC]G|C[GT]G | 632, 788 |
| MspI | C|CGG | 27, 1055 |
| MwoI | GCNNNNN|NNGC | 594, 689 |
| NaeI | GCC|GGC | 28 |
| NcoI | C|CATGG | 11 |
| NgoMIV | G|CCGGC | 28 |
| NlaIII | CATG| | 10, 839 |
| NlaIV | GGN|NCC | 285 |
| NsiI | ATGCA|T | 587 |
| PaeR7I | C|TCGAG | 395 |
| PvuII | CAG|CTG | 632, 788 |
| RsaI | GT|AC | 161 |
| SacI | GAGCT|C | 1040 |
| Sau3AI | |GATC | 284, 761, 918 |
| SmlI | C|TPyPuAG | 395 |
| SpeI | A|CTAGT | 613 |
| StyI | C|C[AT][AT]GG | 11, 976 |
| Taq��I | T|CGA | 187, 394, 429, 804, 999 |
| TfiI | G|A[AT]TC | 104, 185, 196, 777 |
| TliI | C|TCGAG | 395 |
| TseI | G|C[AT]GC | 566, 630, 692, 738, 949 |
| Tsp45I | |GT[CG]AC | 412, 447, 676, 963 |
| Tsp509I | |AATT | 139, 560, 666 |
| TspRI | NNCA[CG]TGNN| | 451 |
| XcmI | CCANNNNN|NNNNTGG | 941 |
| XhoI | C|TCGAG | 395 |
| XmnI | GAANN|NNTTC | 671, 836, 997 |
Click here to view TAIR data
>AT5G11270.1 length:1065
ATGATAAAAG CCATGGCTCT ATCTTCTGCC GGCGTCGTCT CTCATCTTCA | 50 |
TCCTCCGTCG TTTTCTTCGT CGTCAGGATT ATCCGTCAAC AGAGTTCTGT | 100 |
TTCGGAATCG GAACGCTAGT CCTTGTGGTC TATCTCTTCC AATTCTCAAT | 150 |
CCGTCTCGGT CTGTACTTGT TTTTGCTCGT GGCAAGAATC GAAAAGGATT | 200 |
CGTGTCTTCG TCTTCTTCGT CTCCGAAGAA AAACAAAAAG AAAAGTTTGG | 250 |
ATGGAGCTGA TAATGGAGGA GGTGAGGAGG AGGAGGATCC ATTTGAGGCA | 300 |
TTGTTTAATC TTTTAGAAGA AGATTTGAAG AATGATAACT CGGATGATGA | 350 |
GGAGATAAGT GAGGAAGAGT TAGAGGCATT AGCCGATGAG TTAGCTCGAG | 400 |
CATTGGGTGT TGGTGACGAT GTTGATGACA TCGACTTGTT TGGTTCAGTC | 450 |
ACTGGTGATG TTGATGTTGA TGTTGATAAT GATGATGATG ATAATGATGA | 500 |
TGATGATAAT GATGATGATG ATGATGACAG CGAAGAAGAT GAAAGACCGA | 550 |
CTAAGCTGAA GAATTGGCAG CTTAAAAGAC TGGCTTATGC ATTGAAAGCT | 600 |
GGGCGTCGTA AAACTAGTAT TAAAAATCTG GCAGCTGAGG TTTGTCTTGA | 650 |
CAGGGCTTAT GTTCTTGAAT TGCTTCGTGA CCCGCCTCCA AAGCTGCTAA | 700 |
TGCTAAGTGC TACACTACCA GATGAAAAAC CGCCAGTAGC AGCACCTGAG | 750 |
AACTCCTCAC CTGATCCAAG TCCTGTGGAA TCATTATCAG CTGAAGATGT | 800 |
TGTGGTCGAA CCTAAGGAAA AAGTAAAAGA TGAAGCAGTT CATGTGATGC | 850 |
AACAGAGATG GTCTGCTCAG AAAAGAGTGA AGAAAGCTCA CATTGAAACG | 900 |
CTAGAGAAAG TTTACAGAAG ATCAAAACGA CCCACTAATG CTGTGGTTAG | 950 |
CAGCATTGTT CAAGTGACCA ATCTTCCAAG GAAGCGAGTT TTGAAGTGGT | 1000 |
TCGAAGATAA AAGAGCAGAA GACGGAGTTC CAGATAAGCG AGCTCCATAT | 1050 |
CAAGCTCCGG TTTGA | 1100 |
>AT5G11270.1 longest ORF length:354
MIKAMALSSA GVVSHLHPPS FSSSSGLSVN RVLFRNRNAS PCGLSLPILN | 50 |
PSRSVLVFAR GKNRKGFVSS SSSSPKKNKK KSLDGADNGG GEEEEDPFEA | 100 |
LFNLLEEDLK NDNSDDEEIS EEELEALADE LARALGVGDD VDDIDLFGSV | 150 |
TGDVDVDVDN DDDDNDDDDN DDDDDDSEED ERPTKLKNWQ LKRLAYALKA | 200 |
GRRKTSIKNL AAEVCLDRAY VLELLRDPPP KLLMLSATLP DEKPPVAAPE | 250 |
NSSPDPSPVE SLSAEDVVVE PKEKVKDEAV HVMQQRWSAQ KRVKKAHIET | 300 |
LEKVYRRSKR PTNAVVSSIV QVTNLPRKRV LKWFEDKRAE DGVPDKRAPY | 350 |
QAPV | 400 |