fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G15210 ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1)

>AT5G15210.1 CDS map

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Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 77, 324


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>AT5G15210.1 length:816
ATGGATGTAA TAGCTACTAC AACTACTATA GTATCCGACT TGGATTCACG 
50
ACAACCCGAA ATCGAAGCTC CGATCCGGAT CCAGCCCGCG AAGCCTATTT 
100
CTTTCTCAAA CGGCAAACGC TGCCACCACC ATCATCTTGC ATCTGAAGCG 
150
GTTGCGGTTG CGACTTATAA AGAATGTCTA AAGAATCACG CAGCAGGTAT 
200
CGGCGGTCAC GCTTTAGACG GATGCGGCGA GTTTATGCCG TCACCGTCGT 
250
TTAACTCCAA TGACCCCGCT TCACTAACGT GCGCTGCTTG TGGTTGCCAC 
300
CGTAACTTCC ACCGCCGTGA GGAGGATCCA TCTTCTCTCT CTGCCATCGT 
350
CCCTGCGATC GAATTTCGAC CTCACAACCG TCACCAGCTT CCTCCACCGC 
400
CTCCTCCTCA TCTGGCGGGG ATTCGTAGTC CAGACGACGA TGATTCAGCT 
450
TCTCCACCGC CGATCTCGTC TTCTTACATG CTTCTCGCAC TCTCTGGAGG 
500
AAGAGGAGGA GCTAACACGG CGGTTCCAAT GTCTAGGAAA CGTTTTAGGA 
550
CGAAGTTTAG TCAGTATCAG AAGGAGAAGA TGTTCGAGTT CTCGGAGAGA 
600
GTTGGGTGGA GGATGCCGAA AGCTGATGAC GTGGTGGTTA AGGAGTTTTG 
650
TCGGGAGATT GGAGTTGATA AAAGCGTTTT CAAAGTGTGG ATGCATAACA 
700
ACAAGATTTC AGGACGCAGC GGCGCTAGAA GAGCTAACGG CGGAGTAGTA 
750
GTAGGAGGAG TAGGAGATAG TCGTCAGAGT GTTGTTCCGA CAAATGGGTC 
800
GTTTTCTTCG ACGTGA
850

>AT5G15210.1 longest ORF length:271
MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA 
50
VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH 
100
RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA 
150
SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER 
200
VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV 
250
VGGVGDSRQS VVPTNGSFSS T
300