|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G20240 | PI, PISTILLATA | PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) |
>AT5G20240.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssKI, BssSI, BstBI, BstEII, BstNI, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspI, N.BstNBI, NaeI, , NarI, NciI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, RsaI, RsrII, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp509I, TspRI, XbaI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AluI | AG|CT | 296, 309, 486 |
| AvaII | G|G[AT]CC | 203 |
| BanII | GPuGCPy|C | 310 |
| BlpI | GC|TNAGC | 245 |
| BsaBI | GATNN|NNATC | 421 |
| BsaJI | C|CNNGG | 182 |
| BsiHKAI | G[AT]GC[AT]|C | 310, 373 |
| BslI | CCNNNNN|NNGG | 416 |
| Bsp1286I | G[GAT]GC[CAT]|C | 310, 373 |
| BspDI | AT|CGAT | 619 |
| BspHI | T|CATGA | 546 |
| BsrDI | GCAATGNN| | 265 |
| BsrI | ACTGGN| | 306 |
| BstAPI | GCANNNN|NTGC | 126 |
| BstF5I | GGATGNN| | 241 |
| BstYI | Pu|GATCPy | 186, 422 |
| BtgI | C|CPuPyGG | 182 |
| Cac8I | GCN|NGC | 375, 514 |
| ClaI | AT|CGAT | 619 |
| DdeI | C|TNAG | 244, 258, 312 |
| DpnI | GA-CH3|TC | 13, 100, 185, 277, 421, 542 |
| DpnII | |GATC | 13, 100, 185, 277, 421, 542 |
| Fnu4HI | GC|NGC | 488 |
| HaeIII | GG|CC | 389 |
| HinfI | G|ANTC | 578 |
| Hpy188I | TCN|GA | 359, 403 |
| HpyCH4III | ACN|GT | 105, 169, 338 |
| HpyCH4IV | A|CGT | 56 |
| HpyCH4V | TG|CA | 118, 142, 489, 570 |
| MboI | |GATC | 13, 100, 185, 277, 421, 542 |
| MspA1I | C[AC]G|C[GT]G | 487 |
| MwoI | GCNNNNN|NNGC | 126, 519 |
| NcoI | C|CATGG | 182 |
| NlaIII | CATG| | 181, 248, 386, 545 |
| PflFI | GACN|NNGTC | 400 |
| PflMI | CCANNNN|NTGG | 416 |
| PvuII | CAG|CTG | 487 |
| SacI | GAGCT|C | 310 |
| Sau3AI | |GATC | 13, 100, 185, 277, 421, 542 |
| Sau96I | G|GNCC | 203 |
| SfcI | C|TPuPyAG | 509 |
| StyI | C|C[AT][AT]GG | 182 |
| Taqƒ¿I | T|CGA | 15, 369, 393, 618 |
| TfiI | G|A[AT]TC | 578 |
| TseI | G|C[AT]GC | 488 |
| Tsp45I | |GT[CG]AC | 54 |
| Tth111I | GACN|NNGTC | 400 |
| XcmI | CCANNNNN|NNNNTGG | 222 |
Click here to view TAIR data
>AT5G20240.1 length:627
ATGGGTAGAG GAAAGATCGA GATAAAGAGG ATAGAGAACG CAAACAACAG | 50 |
AGTGGTGACG TTCTCAAAGA GGAGGAATGG ATTGGTGAAG AAGGCTAAAG | 100 |
AGATCACAGT TCTTTGTGAT GCAAAAGTTG CCCTCATAAT CTTTGCAAGT | 150 |
AATGGTAAGA TGATTGATTA CTGTTGTCCT TCCATGGATC TTGGTGCTAT | 200 |
GTTGGACCAA TACCAGAAGT TATCTGGCAA GAAACTATGG GATGCTAAGC | 250 |
ATGAGAACCT TAGCAATGAG ATTGATAGGA TCAAGAAAGA GAATGATAGC | 300 |
TTACAACTGG AGCTCAGGCA TTTGAAGGGA GAAGATATAC AGTCTCTCAA | 350 |
CTTGAAAAAT CTGATGGCTG TCGAGCACGC CATTGAACAT GGCCTCGACA | 400 |
AAGTCCGAGA CCACCAGATG GAGATCCTTA TATCAAAGAG GAGAAATGAG | 450 |
AAGATGATGG CGGAGGAGCA ACGGCAACTC ACTTTCCAGC TGCAACAACA | 500 |
GGAGATGGCT ATAGCAAGCA ACGCAAGAGG AATGATGATG AGAGATCATG | 550 |
ATGGGCAGTT TGGATATAGA GTGCAACCGA TTCAGCCAAA TCTTCAGGAA | 600 |
AAGATTATGT CTTTGGTCAT CGATTGA | 650 |
>AT5G20240.1 longest ORF length:208
MGRGKIEIKR IENANNRVVT FSKRRNGLVK KAKEITVLCD AKVALIIFAS | 50 |
NGKMIDYCCP SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDRIKKENDS | 100 |
LQLELRHLKG EDIQSLNLKN LMAVEHAIEH GLDKVRDHQM EILISKRRNE | 150 |
KMMAEEQRQL TFQLQQQEMA IASNARGMMM RDHDGQFGYR VQPIQPNLQE | 200 |
KIMSLVID | 250 |