fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G24930 COL4, ATCOL4 CONSTANS-like 4 (.1)

>AT5G24930.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 663, 669
EcoRV GAT|ATC 355
NotI GC|GGCCGC 327
PvuII CAG|CTG 602, 1007


Click here to view TAIR data

>AT5G24930.1 length:1221
ATGGACCCCA CATGGATAGA CTCATTGACA CGCTCATGTG AAGCCAATAG 
50
TAACACCAAC CACAAAAGAA AGAGAGAGAG AGAGACACTG AAACATAGAG 
100
AGAAGAAAAA GAAGAGGTTT AGAGAGAGAA AAATGGCGTC AAAGCTCTGC 
150
GATTCGTGCA AATCAGCGAC GGCGGCGTTA TACTGCCGAC CAGACGCAGC 
200
GTTTCTATGC TTAAGCTGCG ATTCAAAAGT CCACGCGGCG AACAAACTCG 
250
CGTCACGACA CGCGCGCGTG TGGATGTGTG AAGTGTGCGA GCAAGCACCG 
300
GCACACGTCA CGTGCAAAGC AGACGCGGCC GCGTTATGCG TCACGTGCGA 
350
CCGTGATATC CACTCGGCTA ATCCGTTAGC TCGCCGTCAC GAACGCGTTC 
400
CCGTTACTCC GTTTTACGAT TCCGTCTCTA GTGACGGTTC CGTTAAACAC 
450
ACCGCCGTTA ATTTCCTTGA CGACTGTTAC TTCTCCGATA TAGATGGTAA 
500
CGGAAGCCGT GAAGAAGAGG AGGAAGAAGC TGCTTCGTGG CTGTTACTTC 
550
CCAATCCAAA GACTACAACG ACGGCGACGG CGGGGATCGT TGCTGTTACT 
600
TCAGCTGAGG AAGTTCCGGG AGATAGTCCG GAGATGAACA CTGGTCAACA 
650
GTATTTGTTC TCGGATCCGG ATCCGTATCT GGATCTGGAT TATGGAAATG 
700
TTGATCCGAA GGTGGAATCG TTAGAGCAGA ATAGCTCCGG TACTGATGGT 
750
GTTGTTCCGG TGGAGAATCG GACGGTTAGG ATTCCGACGG TGAACGAGAA 
800
TTGCTTTGAA ATGGATTTTA CCGGAGGATC TAAAGGCTTT ACTTATGGTG 
850
GTGGTTACAA TTGCATCAGT CACAGCGTGT CATCATCGTC GATGGAAGTG 
900
GGAGTGGTGC CAGATGGTGG TTCGGTGGCT GATGTATCGT ATCCTTACGG 
950
TGGTCCTGCA ACCAGTGGAG CTGATCCGGG GACACAGCGG GCTGTTCCGC 
1000
TGACTTCAGC TGAGAGAGAA GCGAGGGTAA TGAGGTACAG AGAGAAGAGG 
1050
AAGAACAGGA AGTTTGAGAA GACTATAAGG TATGCTTCAA GGAAAGCGTA 
1100
TGCGGAAATG AGACCGAGAA TCAAGGGACG GTTTGCGAAG CGGACGGATA 
1150
CAAATGAGAG CAATGATGTG GTTGGTCATG GTGGTATCTT TAGTGGGTTC 
1200
GGACTTGTAC CTACATTTTA G
1250

>AT5G24930.1 longest ORF length:406
MDPTWIDSLT RSCEANSNTN HKRKRERETL KHREKKKKRF RERKMASKLC 
50
DSCKSATAAL YCRPDAAFLC LSCDSKVHAA NKLASRHARV WMCEVCEQAP 
100
AHVTCKADAA ALCVTCDRDI HSANPLARRH ERVPVTPFYD SVSSDGSVKH 
150
TAVNFLDDCY FSDIDGNGSR EEEEEEAASW LLLPNPKTTT TATAGIVAVT 
200
SAEEVPGDSP EMNTGQQYLF SDPDPYLDLD YGNVDPKVES LEQNSSGTDG 
250
VVPVENRTVR IPTVNENCFE MDFTGGSKGF TYGGGYNCIS HSVSSSSMEV 
300
GVVPDGGSVA DVSYPYGGPA TSGADPGTQR AVPLTSAERE ARVMRYREKR 
350
KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDTNESNDV VGHGGIFSGF 
400
GLVPTF
450