fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G24930 (COL4, ATCOL4)

Alias COL4, ATCOL4
TF Classification
FioreDBCO (Click to show phylogenetic tree)
RARTFC2C2(Zn) / CO-like
AtTFDBC2C2-CO-like
PlnTFDBC2C2-CO-like (v3.0), C2C2-CO-like (v1.0)
DATFC2C2-CO-like
TAIR short description CONSTANS-like 4 (.1)
TAIR annotation CONSTANS-like 4 (COL4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 3 (TAIR:AT2G24790.1); Has 3148 Blast hits to 2480 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 2958; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT5G24930.1 280
Entry clone (w/o stop) IE_04F04_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9909: developmental processes ->regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2 4
soybean 1 1 2 4
rice
sorghum
physcomitrella 1 1
Total 2 1 2 4 9
Repression motif
Repression motif
in putative orthologs
        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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