|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G25220 | KNAT3 | KNOTTED1-like homeobox gene 3 (.1.2) |
>AT5G25220.2 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AflII, AgeI, AhdI, AlwI, AlwNI, ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspEI, BspMI, BsrBI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstXI, BstZ17I, Bsu36I, BtgI, BtsI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HpaI, HphI, I-CeuI, I-SceI, KpnI, MboII, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 1006 |
| AccII(FnuDII) | CG|CG | 544 |
| AciI | C|CGC | 74, 80, 95, 125, 204, 219, 246, 252, 258, 630 |
| AfeI | AGC|GCT | 150 |
| AflIII | A|CPuPyGT | 600, 729 |
| AluI | AG|CT | 227, 430, 455, 510, 561, 582, 619, 751, 791, 1039, 1078, 1158 |
| Aor51HI(Eco47III) | AGC|GCT | 150 |
| AvaII | G|G[AT]CC | 909 |
| BanI | G|GPyPuCC | 628 |
| BclI | T|GATCA | 558 |
| BlpI | GC|TNAGC | 581 |
| BsaHI | GPu|CGPyC | 628 |
| BsaWI | [AT]|CCGG[AT] | 358, 552 |
| BslI | CCNNNNN|NNGG | 816, 1118 |
| BsmI | GAATGCN| | 466 |
| BspDI | AT|CGAT | 346, 574 |
| BspHI | T|CATGA | 677 |
| BspT107I(HgiCI) | G|G[TC][AG]CC | 628 |
| BsrDI | GCAATGNN| | 747 |
| BsrFI | Pu|CCGGPy | 397 |
| BsrI | ACTGGN| | 1205 |
| BssKI | |CCNGG | 810, 1053 |
| BstF5I | GGATGNN| | 445, 822 |
| BstNI | CC|[AT]GG | 810, 1053 |
| BstUI | CG|CG | 544 |
| BstYI | Pu|GATCPy | 485 |
| BtrI | CAC|GTC | 601 |
| Cac8I | GCN|NGC | 223, 458, 585 |
| Cfr10I | [AG]|CCGG[TC] | 397 |
| ClaI | AT|CGAT | 346, 574 |
| DdeI | C|TNAG | 164, 580, 589, 617, 925, 1117 |
| DpnI | GA-CH3|TC | 343, 484, 557 |
| DpnII | |GATC | 343, 484, 557 |
| DraI | TTT|AAA | 709 |
| EcoNI | CCTNN|NNNAGG | 816 |
| Fnu4HI | GC|NGC | 226, 249, 255, 261, 438, 509, 630, 1157 |
| HaeII | PuGCGC|Py | 150, 628 |
| HaeIII | GG|CC | 1104 |
| HhaI | GCG|C | 149, 521, 627 |
| HinP1I | G|CGC | 149, 521, 627 |
| HindIII | A|AGCTT | 792, 1079 |
| HinfI | G|ANTC | 234, 377, 541, 548, 571, 917 |
| HpaII | C|CGG | 357, 396, 551 |
| Hpy188I | TCN|GA | 165, 231, 334, 566, 837, 1190 |
| Hpy99I | CG[AT]CG| | 419, 602, 647, 653 |
| HpyCH4III | ACN|GT | 698, 1230 |
| HpyCH4IV | A|CGT | 525, 600 |
| HpyCH4V | TG|CA | 720, 742, 1140, 1155 |
| KasI | G|GCGCC | 628 |
| MboI | |GATC | 343, 484, 557 |
| MfeI | C|AATTG | 718, 1176 |
| MseI | T|TAA | 140, 708, 794, 966, 1025 |
| MslI | CAPyNN|NNPuTG | 734 |
| MspA1I | C[AC]G|C[GT]G | 263 |
| MspI | C|CGG | 357, 396, 551 |
| MwoI | GCNNNNN|NNGC | 255, 438, 528, 585, 627, 750 |
| NarI | GG|CGCC | 628 |
| NlaIII | CATG| | 676, 728, 740, 971 |
| NlaIV | GGN|NCC | 628 |
| NruI | TCG|CGA | 545 |
| NspI | PuCATG|Py | 729 |
| PciI | A|CATGT | 729 |
| PspGI | |CC[AT]GG | 810, 1053 |
| Sau3AI | |GATC | 343, 484, 557 |
| Sau96I | G|GNCC | 909 |
| ScrFI | CC|NGG | 810, 1053 |
| SfoI | GGC|GCC | 628 |
| SmlI | C|TPyPuAG | 638 |
| Taqƒ¿I | T|CGA | 345, 573, 879 |
| TfiI | G|A[AT]TC | 234, 377, 541, 571, 917 |
| TseI | G|C[AT]GC | 226, 264, 509, 1157 |
| Tsp45I | |GT[CG]AC | 354 |
| Tsp509I | |AATT | 134, 717, 1175 |
| TspRI | NNCA[CG]TGNN| | 275, 1231 |
Click here to view TAIR data
>AT5G25220.2 length:1260
ATGGCGTTTC ATCACAATCA TCTCTCACAA GACCTCTCCT TCAATCATTT | 50 |
CACCGACCAA CACCAACCTC CACCTCCGCA ACCGCCTCCT CCTCCTCCGC | 100 |
AACAGCAACA ACATTTCCAA GAAGCACCGC CTCCTAATTG GTTAAACACA | 150 |
GCGCTTCTTC GTTCCTCAGA TAACAACAAT AACTTCCTCA ACCTCCACAC | 200 |
AGCCACCGCT AACACCACAA CCGCAAGCAG CTCCGATTCT CCTTCCTCCG | 250 |
CCGCCGCCGC CGCCGCTGCT AACCAGTGGC TATCTCGCTC CTCCTCTTTC | 300 |
CTCCAACGAA ACAACAACAA CAACGCTTCC ATAGTCGGAG ATGGGATCGA | 350 |
TGATGTCACC GGAGGAGCAG ACACTATGAT TCAGGGAGAG ATGAAAACCG | 400 |
GCGGTGGAGA AAACAAAAAC GACGGCGGAG GAGCTACGGC GGCGGATGGA | 450 |
GTAGTGAGCT GGCAGAATGC GAGACACAAG GCGGAGATCC TTTCGCATCC | 500 |
TCTTTACGAG CAGCTTTTGT CGGCGCACGT TGCTTGTTTG AGAATCGCGA | 550 |
CTCCGGTTGA TCAGCTTCCG AGAATCGATG CTCAGCTTGC TCAGTCTCAA | 600 |
CACGTCGTCG CTAAATACTC AGCTTTAGGC GCCGCCGCTC AAGGTCTCGT | 650 |
CGGCGACGAT AAAGAACTTG ACCAGTTCAT GACACATTAT GTGTTGCTAC | 700 |
TGTGTTCATT TAAAGAGCAA TTGCAACAAC ATGTGCGTGT TCATGCAATG | 750 |
GAAGCTGTGA TGGCTTGTTG GGAGATTGAG CAGTCTCTTC AAAGCTTAAC | 800 |
AGGAGTGTCT CCTGGAGAAG GGATGGGAGC AACAATGTCT GACGATGAAG | 850 |
ATGAACAAGT AGAGAGTGAT GCTAATATGT TCGATGGGGG ATTAGATGTG | 900 |
TTGGGTTTTG GTCCTTTGAT TCCTACTGAG AGTGAGAGGT CGTTGATGGA | 950 |
AAGAGTTAGA CAAGAACTTA AACATGAACT CAAACAGGGT TACAAGGAGA | 1000 |
AGATAGTAGA CATAAGAGAG GAGATATTAA GGAAGAGAAG AGCTGGGAAG | 1050 |
TTACCAGGAG ATACCACCTC TGTTCTCAAA GCTTGGTGGC AATCTCATTC | 1100 |
CAAATGGCCT TACCCTACTG AGGAAGATAA GGCGAGGTTG GTGCAAGAGA | 1150 |
CAGGTTTGCA GCTAAAACAG ATAAACAATT GGTTCATCAA TCAGAGAAAG | 1200 |
AGGAACTGGC ATAGCAATCC ATCTTCTTCC ACTGTATTGA AGAACAAACG | 1250 |
CAAAAGGTGA | 1300 |
>AT5G25220.2 longest ORF length:419
MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT | 50 |
ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF | 100 |
LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG | 150 |
VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ | 200 |
HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM | 250 |
EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV | 300 |
LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK | 350 |
LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK | 400 |
RNWHSNPSSS TVLKNKRKR | 450 |