fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT5G25220 (KNAT3)

Alias KNAT3
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / SHOOTMERISTEMLESS
AtTFDBHomeobox / KNOX II
PlnTFDBHB (v3.0), HB (v1.0)
DATF
TAIR short description KNOTTED1-like homeobox gene 3 (.1.2)
TAIR annotation A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia (.1), A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia (.2)
Gene model
Gene model cDNA support
AT5G25220.1 106
AT5G25220.2 82
Entry clone (w/o stop) RE_0574_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5829: cytosol ->cytosol
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 71345: other cellular processes ->cellular response to cytokine stimulus
(P) 9416: response to abiotic or biotic stimulus ->response to light stimulus
(P) 9722: other biological processes ->detection of cytokinin stimulus
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 2 5
soybean 1 3 14 18
rice 1 2 3 6
sorghum 1 1
physcomitrella 1 1 2
Total 5 7 20 32
Repression motif
Repression motif
in putative orthologs
TFAGHRLRLSLRITVF at 344/444 in sorghum Sb009772 (Type Ia)

        
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo
—cA•¨ŠúAŽq—t•ªŒú‚­ƒKƒ‰ƒX‰»‚µA‚Ђ傤–Ê‚²‚‚²‚Â‚Å“à‘¤‚Ö˜p‹ÈAã󎲒Z‚¢(‚Ù‚Æ‚ñ‚ǂ̉萶‚¦), –{—t‚́A¶‰E‘Ώ̂ł͂Ȃ­A—t•¿’·‚­‚ւ肪‚Ђç‚Ђ炵‚Ä‚¢‚é(23/26), –{—tbushy(6/26), ’¸‚½‚ñ‚̉ԗZ‡(7/26), ‰Ô•Ù’Z‚¢(18/26), •äó‰Ô˜(3/26), ‚³‚â‚Í‚Å‚±‚Ú‚±‚µ‚Ä‚¢‚Ä•L‚­‹È‚ª‚è—L(10/26), ‚³‚â’Z‚¢(6/26), (phenotype_A20040:leaf_¶‰E”ñ‘Ώ́E•Ó‰‚Ђç‚Ђç/flower_‰Ô•Ù’Z‚¢/silique_•LE‚Å‚±‚Ú‚±E‹È‚ª‚è/ƒƒ[ƒbƒgbushy/ƒJƒEƒŠƒ““›ó‚ÉŠª‚¢‚Ä‚é/’¸‰Ô—Z‡/•äó‰Ô˜/‚³‚â’Z‚¢)
long petiole (direct input), short pedicel (A20040), bushy (A20040), abnormal leaf (A20040), short silique (A20040), abnormal seedling (direct input), abnormal flower (direct input, A20040), abnormal petal (A20040), abnormal shaped silique (direct input, A20040), thickened cotyledon (direct input), abnormal shaped leaf (direct input, A20040)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project loss of apical dominance, hyponastic leaf, too many rosettes (A20654-79)
Phenotype in ornamental plants

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