fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G38860 bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1)

>AT5G38860.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 13, 726
HindIII A|AGCTT 212, 381, 849
HpaI GTT|AAC 612, 706
PstI CTGCA|G 538
StyI C|C[AT][AT]GG 322


Click here to view TAIR data

>AT5G38860.1 length:897
ATGAACTCTC ATGATATCGA TGATCAGTTA GAAGCAGATG TATACAGTAA 
50
CTTGCCTTCT CGAAATGATT CTTCAACAGG GAGGAGAAAT CGAAACTCGT 
100
GTAGATCGAA ACACTCAGAG ACTGAGCAAC GAAGAAGAAG CAAAATCAAT 
150
GAAAGATTTC AGAGTTTAAT GGATATTATA CCTCAGAATC AGAATGATCA 
200
GAAACGAGAT AAAGCTTCTT TCTTGTTGGA GGTTATAGAG TATATTCACT 
250
TTCTTCAAGA AAAAGTTCAC ATGTATGAAG ATTCTCACCA AATGTGGTAT 
300
CAATCCCCAA CCAAATTGAT TCCTTGGAGA AATAGTCATG GGTCTGTTGC 
350
GGAGGAAAAT GACCATCCTC AAATCGTTAA AAGCTTTTCA AGTAATGATA 
400
AAGTTGCTGC TTCTTCGGGT TTTCTCTTGG ATACGTACAA TTCAGTAAAT 
450
CCTGATATTG ACTCAGCAGT TAGCACCAAG ATTCCTGAAC ACAGTCCTGT 
500
TTCAGCAGTT TCATCGTATC TACGTACCGA GCCTTCGCTG CAGTTTGTTC 
550
AGCATGACTT TTGGCAACCA AAAACAAGTT GTGGAACAAT TAACTGTTTT 
600
ACAAATGAAT TGTTAACATC TGACGAAAAA ACATCAGCCA GCTTGTCCAC 
650
TGTCTGCTCA CAAAGGGTAC TTAACACTCT AACTGAAGCA CTTAAGTCAT 
700
CGGGTGTTAA CATGTCAGAG ACCATGATAT CTGTGCAGTT AAGCCTTCGG 
750
AAAAGAGAAG ATCGCGAGTA TTCTGTTGCT GCGTTTGCTT CTGAGGATAA 
800
TGGTAATAGC ATCGCTGATG AAGAAGGGGA CTCTCCTACT GAAACTAGAA 
850
GCTTCTGCAA TGATATTGAT CATTCCCAGA AGAGAATAAG ACGATAA
900

>AT5G38860.1 longest ORF length:298
MNSHDIDDQL EADVYSNLPS RNDSSTGRRN RNSCRSKHSE TEQRRRSKIN 
50
ERFQSLMDII PQNQNDQKRD KASFLLEVIE YIHFLQEKVH MYEDSHQMWY 
100
QSPTKLIPWR NSHGSVAEEN DHPQIVKSFS SNDKVAASSG FLLDTYNSVN 
150
PDIDSAVSTK IPEHSPVSAV SSYLRTEPSL QFVQHDFWQP KTSCGTINCF 
200
TNELLTSDEK TSASLSTVCS QRVLNTLTEA LKSSGVNMSE TMISVQLSLR 
250
KREDREYSVA AFASEDNGNS IADEEGDSPT ETRSFCNDID HSQKRIRR
300