fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G38860 bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1)

>AT5G38860.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, KpnI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
BamHI G|GATCC 622
BglII A|GATCT 1354, 1908, 5955, 6320
EcoRI G|AATTC 3370, 3839
EcoRV GAT|ATC 419, 1979, 4139, 5661
HindIII A|AGCTT 628, 1407, 1594, 2607, 4436, 4828, 5137, 5907, 6295
HpaI GTT|AAC 5059, 5641
NcoI C|CATGG 275, 6660, 7314
NdeI CA|TATG 5119
PstI CTGCA|G 946, 2856, 4985
StyI C|C[AT][AT]GG 275, 1800, 4625, 5336, 6660, 7314
XbaI T|CTAGA 1187, 1335, 2772, 6317
XhoI C|TCGAG 2229, 3121, 3287


Click here to view TAIR data

>AT5G38860 genomic sequence (4127-4281,4380-4455,4535-4630,4775-5112,5601-5730,5854-5955,) length:7670
actttgtaaa ttcatactct aaaccctgag ctttcctgat tgatatattt 
50
ttttttgaac ggaaatttta cttgtgattt atctcataat ttattttata 
100
ttagggtgcg gcaattaaca atacttacgt ctgtctctct ctttctctcc 
150
gaaaagtcaa aatgaataag ccttatcatt tgatccattc atagagctta 
200
tccaaacgca atctctcacg accgtctcct ATGGCTTCTG CTCGAACTTG 
250
GAGATACAAC GTCTTCCCGA GCTTCCATGG AGGAGATATT CGTAAGACTT 
300
TTCTCTCTCA TTTACGTAAG CAGTTCAACT CAAATGGGAT TACAATGTTT 
350
GATGATCAAG GAATCGAGAG GAGCCAAACC ATAGCCCCTG CTCTCATACA 
400
AGCGATTAGA GAATCTAGGA TATCGATTGT GGTTCTTTCA AAGAACTATG 
450
CTTCTTCGAG TTGGTGCTTG AATGAATTGG TGGAGATTTT GAAATGCAAA 
500
GACGTAGTGA TGCCGATCTT CTATGAAGTA GATCCATCCG ATGTACGGAA 
550
ACAGACCGGA GATTTTGGGA AGGCCTTCAA AAATAGTTGT AAAAGTAAAA 
600
CTAAGGAGGA GAGGCAGAGA TGGATCCAAG CTTTAATTTT TGTTGGCAAC 
650
ATAGCTGGAG AACACTCGCT GAAATGgttt gtttgttttc gatcgactaa 
700
ttttggggct ttcttttaag ttacacatca ctttataacg cctatctgat 
750
attttgtttc ctctcttgtt agGGAAAATG AAGCGGATAT GATTGAAAAG 
800
ATAGCCAAAG ATGTTTCAGA TAAACTGAAT GCTACACCTT CTAAAGATTT 
850
TGATGCATTT GTGGGACTTG AGTTTCACAT TAGGGAATTA AGTTCTCTGC 
900
TATACCTAGA CTATGAGCAA GTGAGGATAG TAGGAATCTG TGGCCCTGCA 
950
GGAATCGGTA AGACTACCAT TGCTCGTGCT TTACAAAGCC TACTCTCTAG 
1000
CAATTTTCAG CGAAGTTGTT TTATGGAGAA TGTTAGGGGA AGTCTTAATA 
1050
TTGGGCTTGA CGAGTATGGT CTGAAGTTAG ATTTACAAGA ACGACTTCTT 
1100
TCAAAGATTA TGAACCAAAA GGGTATGAGG ATAGAGCATT TAGGCACAAT 
1150
AAGAGATAGG TTACATGACC AAAAAGTGCT TATCATTCTA GATGATGTTA 
1200
ATGATCTCGA TTTGTATGCT TTGGCTGATC AGACAACGTG GTTTGGTCCT 
1250
GGAAGTAGGA TTATCGTGAC AACAGAAGAC AACGAGCTTT TGCAGAAACA 
1300
TGATATTAAC AATGTCTACC ATGTGGATTT TCCATCTAGA AAAGAAGCTC 
1350
TTGAGATCTT TTGCAGATGT GCTTTTAGAC AAAGCTCTGC ACCTGATACG 
1400
ATTCTAAAGC TTGCAGAACG AGTAACAGAG CTTTGTGGTA ATCTTCCATT 
1450
GGGTCTCTGT GTCATAGGTT CATCTTTACA CGGGAAAACT GAGGATGAGT 
1500
GGGAAATTTT AATTCGCAGA CTAGAAATTA GTCTTGATCG AGATAACGAG 
1550
GCACAACTTA GAGTTGGGTA TGATAGCTTA CATGAGAACG AGCAAGCTTT 
1600
ATTTCTCAGC ATTGCAGTCT TCTTCAACTA TAAAGACCGT CAGCTTGTGA 
1650
TGGCCATGCT CCTTGACAGT AACCTAGATG TCGAGTATGG GTTAAGAACC 
1700
CTCGCCAATA AATCTCTAAT ACATATATCT AGGAATGAGA AAATAGTGAT 
1750
GCATAACTTA CTACAACATG TGGGTAGACA AGCCATTCAA AGACAAGAAC 
1800
CTTGGAAACG CCACATCTTA ATAGATGCTG ACGAGATATG CAATGTCCTT 
1850
GAAAATGATA CAgtaagtat tccacgttct aaacttaatc atattgtgaa 
1900
gattcacaga tcttacatat tgtgctcacg atttcttacc tttgtaatat 
1950
tttttcagGA TGCTAGAATT GTGTCAGGGA TATCATTTGA TATATCCAGA 
2000
ATCGGCGAAG TTTTTTTAAG CGAGAGAGCT TTTAAAAGAT TGTGTAATCT 
2050
CCAATTCCTC AGGGTGTTTA AGACTGGATA TGATGAAAAA AACAGAGTGC 
2100
GCATACCGGA GAACATGGAG TTTCCACCTC GTCTAAGGTT ACTACAGTGG 
2150
GAAGCATATC CGAGGAGAAG TCTTTCTCTT AAACTTAACC TGGAATATCT 
2200
TGTCGAACTT GATATGGAAG GTAGCCTGCT CGAGAAGCTA TGGGATGGAA 
2250
CTCAGgttag ttatcataaa ttcatatctt taatgatgtt atacatattt 
2300
tctctctatt ctgatgtttc tactctaaca tctggtttac attcagCCCC 
2350
TTGCAAATCT CAAGAAGATG TCTTTGTCAA GTTCATGGTA TTTAAAGAAA 
2400
CTTCCGGATC TGTCAAATGC TACAAATCTC GAAGAATTGG ATCTGAGAGC 
2450
TTGCCAGAAT TTAGTAGAGC TTCCTTCCTC CTTTTCTTAT CTGCATAAGC 
2500
TAAAGTATTT GAATATGATG GGATGCAGAA GGCTAAAAGA AGTTCCACCT 
2550
CATATCAACT TGAAGTCTCT TGAATTGGTC AACATGTATG GATGCTCAAG 
2600
ATTAAAAAGC TTTCCAGATA TTTCTACAAA CATCAGTTCA CTCGACATAT 
2650
CATACACTGA TGTGGAAGAA CTACCTGAAT CAATGACGAT GTGGTCTCGC 
2700
CTACGTACTC TCGAAATATA CAAAAGTAGA AACCTCAAGA TAGTAACACA 
2750
TGTGCCCCTA AACCTAACAT ATCTAGACCT CAGCGAGACT AGAATTGAGA 
2800
AGATTCCAGA TGACATCAAA AATGTTCATG GGCTGCAAAT TTTATTTCTA 
2850
GGTGGCTGCA GAAAACTCGC ATCATTGCCA GAGCTTCCTG GTTCGCTCTT 
2900
GTACTTATCA GCAAACGAGT GTGAATCACT TGAGAGCGTA TCTTGCCCTT 
2950
TTAATACTTC ATACATGGAA CTCAGCTTCA CCAACTGCTT CAAACTAAAC 
3000
CAAGAAGCAC GCAGAGGAAT TATTCAACAA TCATTTTCTC ATGGGTGGGC 
3050
ATCCTTACCT GGAAGAGAGT TGCCCACTGA CTTATACCAC CGATCTACCG 
3100
GACATTCCAT CACCGTTCGT CTCGAGGGCA AGACTCCTTT TTCTGCATTC 
3150
TTTGGATTTA AGGTTTTCCT CGTGATTTCC CCTAACCATG ATGCTGAAGA 
3200
AACTAGCAAT TCTCCCTTAT TTTGTCCTCG CATTGGCAAA ATCGGTTGCT 
3250
CCGATGACGA AACACCTATT TATATTATCC CCAAACCTCG AGCAGAACAT 
3300
CTAGTTATGT TTCACTCTGA CTTGCATAAC AAGGAAAAAT GTCATGAAGT 
3350
AGGCAACGAG ATACTGTTTG AATTCAGCAA CATATCCGAC ACCTATGAGA 
3400
TTATTGAGTG TGGTGTCAGA TTCTATACAG ATGAACAGGT GAAATCAGTG 
3450
AAAGGAGAAA TGAATATGAA ATAGaccaag tttgtgaaga tgaaaacgat 
3500
tggagctatg agtttggacc cgtggaagca ttggaatgct ctaaaaataa 
3550
tggacataat gatagcctaa tctgtacttc gaacgaagac aagatcgaag 
3600
ccaacaaata cacagattgt tggagttggc tcatcatctg ttttgatgtc 
3650
tcccatattg tgagaagcat cggaagttta gtttggggag gaagatgaga 
3700
gaagcaagaa ggagaatatc aaagtggaga agtcgaacga atttgcaagt 
3750
gaggaaagaa tatctgttta tactttacaa tgacttgttt ggctgcttca 
3800
ctgagttgga tatgatgagt agtagcatca tactgtttga attcggatgc 
3850
agcaaatatt actgaaatgc agtgtacgga tcgtgaaaac tgacaaaatt 
3900
gatagtagca acaacagtga attaatttgg gcctgaaact atccgtttta 
3950
aatgggcttt tgagcctttc acattatcta tgtaattttc gattttatct 
4000
tccttttctt ttcaccttct cgacgaacac acctacacaa aaatcaatca 
4050
cagtctctgt ctcactcgcc ggagtttcgg tcactgcgcc atctccgggg 
4100
tcgagttcgt cgtacttcat cgaactATGA ACTCTCATGA TATCGATGAT 
4150
CAGTTAGAAG CAGATGTATA CAGTAACTTG CCTTCTCGAA ATGATTCTTC 
4200
AACAGGGAGG AGAAATCGAA ACTCGTGTAG ATCGAAACAC TCAGAGACTG 
4250
AGCAACGAAG AAGAAGCAAA ATCAATGAAA Ggtaaataat aagtgttcaa 
4300
agtttgaatt tttatcagat tttctaaaaa gggtaacaag aaagtttcgt 
4350
aatttgtgat tgttggttgg tggatacagA TTTCAGAGTT TAATGGATAT 
4400
TATACCTCAG AATCAGAATG ATCAGAAACG AGATAAAGCT TCTTTCTTGT 
4450
TGGAGgttag taaaatttat agttttgaac agaacatgtg tttcagagaa 
4500
tcagaatgat gtttgctttt atatgttgtc tcagGTTATA GAGTATATTC 
4550
ACTTTCTTCA AGAAAAAGTT CACATGTATG AAGATTCTCA CCAAATGTGG 
4600
TATCAATCCC CAACCAAATT GATTCCTTGG gtatattcct tctcctatct 
4650
ttggttggtt ttctgttata ttgaatcgtt tttgttacat ttttttagag 
4700
aaacatggtt attgtgttaa gtgtttcatc tttcttggta tttttgacaa 
4750
ctgtttcatg taactttgat gcagAGAAAT AGTCATGGGT CTGTTGCGGA 
4800
GGAAAATGAC CATCCTCAAA TCGTTAAAAG CTTTTCAAGT AATGATAAAG 
4850
TTGCTGCTTC TTCGGGTTTT CTCTTGGATA CGTACAATTC AGTAAATCCT 
4900
GATATTGACT CAGCAGTTAG CACCAAGATT CCTGAACACA GTCCTGTTTC 
4950
AGCAGTTTCA TCGTATCTAC GTACCGAGCC TTCGCTGCAG TTTGTTCAGC 
5000
ATGACTTTTG GCAACCAAAA ACAAGTTGTG GAACAATTAA CTGTTTTACA 
5050
AATGAATTGT TAACATCTGA CGAAAAAACA TCAGCCAGCT TGTCCACTGT 
5100
CTGCTCACAA AGgtaagaca tatgtagagc aaaataaagc tttttttgtt 
5150
cagtaattaa ttcatttttt tggtagaaag tttgggttgg tatatagttt 
5200
ctcacggatg tacactcatt tccttcctgt ctggctctcc ttaaacagtg 
5250
gcttaccttt tttggatact aagagagaat gatataatac aaggttccaa 
5300
tgatgcctca gctatttgcg gagacttctt gtttgccttg gctatgaagt 
5350
tctgtaggat agagtatgag ataaatgctg taaacttggt aattgttaga 
5400
ggaaaagatt ttgcataacc ataatccaaa gtttctcttt tgaatagtgc 
5450
ttctctctcc taaataggta gtcattcaaa ctgaagatcc tatctgcttc 
5500
tgtatttgga acagactcag ggttctaaaa acggataact ggaggaaata 
5550
aagatggaga gatttgattg aaaactcttg tttggtttga ttgtgaacag 
5600
GGTACTTAAC ACTCTAACTG AAGCACTTAA GTCATCGGGT GTTAACATGT 
5650
CAGAGACCAT GATATCTGTG CAGTTAAGCC TTCGGAAAAG AGAAGATCGC 
5700
GAGTATTCTG TTGCTGCGTT TGCTTCTGAG gtatgcctgt aacattttta 
5750
cagtggaaaa gaaaaagaag tctactactc tgcaagtaat tcttataaaa 
5800
acatttctat gtattttaat ttgtattttg atgctatgta tctttttcat 
5850
tagGATAATG GTAATAGCAT CGCTGATGAA GAAGGGGACT CTCCTACTGA 
5900
AACTAGAAGC TTCTGCAATG ATATTGATCA TTCCCAGAAG AGAATAAGAC 
5950
GATAAgatct ggttttctat tttctatgtt atgacaactg tttgataatt 
6000
ttgttacttt cggtgagtca ggatcagtag gtgtagatac tacttttatc 
6050
gtgctgcaac tattttaaat gatatagtaa aaactaagta gaatgatgta 
6100
acaagtttcg caaatctata acaagagttt gctccattta atggtacttt 
6150
aagtatatgg tctcttagat atatcacttc ttgcccttct atttctcaca 
6200
ctattaaccg ggaaattatt tcgtgcttgt tgacatgtct gtatcaagta 
6250
atgcgtttga tttgcagaaa ggagtccttg ttttcttgtg tctcaagctt 
6300
gatttgagct agagtatcta gatctttaga ttcaagaaca gatgcaatat 
6350
tctgtagaag ttgaaaactc atctttattc tttaacctta tgtaaatatg 
6400
actgtctata caacagatag ttcatctctc gactaaatgt ttggtatata 
6450
tatgtatata ttatgatact cttgttcgat taaggaggct gtttgtttgc 
6500
tgaaggagAT GAAGCAGGAG GAGGGCCAGG TTTGTTTGGT GGTGGTAGGA 
6550
ATGGGAATGG AGGAAATGGA AAGATCGACG GAGGTGGAGG AGGAGGAGGA 
6600
GGAGGTGGTG GTGGTGGATT TAGGCCTGGA AAGATCGGTG GCAGTGGAGG 
6650
AAAGAGAGAC CATGGTGGAG GAGGAGTGGG AAGAGGAGGA CGAGGCTGAA 
6700
ATGGGTTTGG AGGGAATATC GATGGAGGAG GAGTGGGAGG AGGCTGAGGA 
6750
GGATGAGGCT GAAATGGGTT TGGAGGGAAG AACGACGGAG GAGGAGAAGC 
6800
TGGAGCTGGA GGAGGCTGAT GAAATATTGG AGGGAAGAAC GACGGAGGAG 
6850
TTGTGGGAGG AAGCTGAGGA GGATGAGGCT GAAATGGGTT TGGAGGGAAT 
6900
ATCGATGGAG GAGCAGGAGG TGGCTGAAGA GGACGAGGCT GAAATGGGTT 
6950
TGGAGGGAAT ATCGATGGAG GTTCGGGAGG TGGCGGAGGA GGACGAGGCT 
7000
GAAACGGGTT TGGAGGGAAT ATTGAGGGAG GAGGAGCAGG AGGTGGATGA 
7050
GGAAATAATG GAGGAAATAT TGATGGAGGA GGAGCGGGAG GTGGCTTAGG 
7100
AAATAATGGA GGAAATATCG ATGGTGGCGG AGGACGAGGC TGAAATGGGT 
7150
TTGGAGGAAA GATTGAagga ggtggtggtc gaaacgggtt tggtgggaaa 
7200
aatgagggtg gtgggggctt aaatggattg ggtgggaaaa tcgaaggtgg 
7250
tggtgcaaat gggtttggcg gaaaaatcga atgtggtggc gcaaacgggt 
7300
ttggaggaag aaaccatgga tgtggggaaa acaacttatt gtctgtcgta 
7350
attatgtttg ctttgttttg caggtatctt gatgatctcc tctttttgtg 
7400
ttgatgatct cttcttcttg tttgcctaat atgtttcaga atccgtcgag 
7450
tctttgcaca tctcacctca gagataggac acaaaacctg aaattctctg 
7500
tgataacttt ttgtctcata tctgaaactt ggttcttctt gtctgcaatc 
7550
aagctgacct gcacaaatcc actcagaaga agacaaaact ttctcagaac 
7600
agaaaggaga aaagtttcta aatactaaaa cttgtttttg gtgatgatac 
7650
ctgagactgt gaagaggtta 
7700