fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G39760 ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1)

>AT5G39760.1 CDS map

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Uncut enzymes: ApaI, AscI, BglII, HindIII, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 83
EcoRI G|AATTC 229, 649
EcoRV GAT|ATC 787
HpaI GTT|AAC 982


Click here to view TAIR data

>AT5G39760.1 length:1005
ATGATGGATA TGACTCCTAC AATAACAACA ACAACAACAC CAACTCCTAA 
50
ATCACCCGAA CCCGAATCCG AAACTCCGAC CCGGATCCAA CCGGCGAAAC 
100
CCATTTCCTT TAGCAACGGC ATCATCAAAC GCCACCACCA CCACCACCAT 
150
CCTCTCCTCT TTACTTACAA AGAATGTCTC AAAAACCACG CGGCGGCTTT 
200
AGGTGGTCAC GCTCTCGACG GTTGCGGCGA ATTCATGCCG TCTCCGTCGT 
250
CAATCTCCTC CGATCCAACT TCTCTCAAAT GTGCTGCTTG TGGCTGCCAC 
300
CGTAATTTCC ACCGCCGTGA TCCAGATAAC AACAACGACT CTTCCCAAAT 
350
CCCTCCTCCT CCTTCCACCG CCGTAGAGTA TCAACCTCAC CACCGTCATC 
400
ATCCACCACC ACCACCACCT CCTCCACCAC CACGTAGTCC TAACTCAGCT 
450
TCTCCTCCAC CAATCTCTTC CTCTTACATG CTCTTATCTC TCTCCGGTAC 
500
TAATAACAAC AACAACAACT TAGCTTCTTT CTCCGATCTT AACTTCTCCG 
550
CCGGAAACAA CCACCACCAC CACCACCAAC ATACTCTTCA CGGATCTCGT 
600
AAAAGATTCC GAACAAAATT CAGCCAGTTT CAGAAAGAGA AGATGCATGA 
650
ATTCGCCGAA CGTGTTGGTT GGAAGATGCA AAAACGTGAC GAAGACGATG 
700
TTCGTGATTT TTGCCGGCAG ATCGGAGTTG ATAAAAGTGT TCTCAAAGTT 
750
TGGATGCATA ACAACAAAAA CACCTTTAAC CGCCGTGATA TCGCCGGAAA 
800
CGAGATCCGG CAAATCGATA ACGGCGGAGG AAACCACACT CCGATTCTCG 
850
CCGGCGAGAT TAATAACCAT AACAATGGAC ACCACGGTGT CGGAGGAGGA 
900
GGAGAGCTTC ACCAGAGTGT TAGTAGCGGC GGTGGTGGCG GAGGATTTGA 
950
TAGTGATAGC GGCGGAGCTA ACGGTGGTAA CGTTAACGGA TCATCGTCGT 
1000
CGTGA
1050

>AT5G39760.1 longest ORF length:334
MMDMTPTITT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH 
50
PLLFTYKECL KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH 
100
RNFHRRDPDN NNDSSQIPPP PSTAVEYQPH HRHHPPPPPP PPPPRSPNSA 
150
SPPPISSSYM LLSLSGTNNN NNNLASFSDL NFSAGNNHHH HHQHTLHGSR 
200
KRFRTKFSQF QKEKMHEFAE RVGWKMQKRD EDDVRDFCRQ IGVDKSVLKV 
250
WMHNNKNTFN RRDIAGNEIR QIDNGGGNHT PILAGEINNH NNGHHGVGGG 
300
GELHQSVSSG GGGGGFDSDS GGANGGNVNG SSSS
350