fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G39860 BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)

>AT5G39860.1 genomic map

>>Show CDS map




Uncut enzymes: ApaI, AscI, BamHI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI
Name Recognition sequence Cut positions
BglII A|GATCT 14
EcoRI G|AATTC 445, 6179
EcoRV GAT|ATC 1549, 1970, 5526
HindIII A|AGCTT 4117
HpaI GTT|AAC 1681, 6138
NdeI CA|TATG 2691, 3230
SpeI A|CTAGT 2966, 6026
StyI C|C[AT][AT]GG 4308, 6202
XhoI C|TCGAG 3493


Click here to view TAIR data

>AT5G39860 genomic sequence (4272-4397,4734-4886,) length:6538
gagtgaaaaa tccagatctt cgtgtagata tatcatttaa attccttttt 
50
ttaactagat aaatatacca aagtaaaaaa tttatttact attgaagtct 
100
tttcttttaa taaattagag tcactcagta aaaatgattt ttttcttaac 
150
tagataaata tatcaaaata aaaaaacttt attaccattg aagtattttc 
200
ttttaataaa ttggagtcac tccgtaaaaa tgatccttaa cttaattgta 
250
aagtatttaa tttaacttaa ttgttggttt tgccattttt tgaatagttt 
300
gtagattttg tatattttaa gacaacaaaa atgtgattta agatgcgttt 
350
tactcgtttg gatttaatca ttttaattta tataaaagac atatttttgc 
400
aaaaacaatt cgtaatatgt acacttaagt gttaaaaaat ggcagaattc 
450
gtaaactatt caaaatatta ttgttagatt ttttttttaa acggcatttt 
500
agacaagaat ccctatttac ctagagtctt caatttgaat ttagaaaata 
550
tggaattaaa tttaatgtac tttcttaatg atacttactg taaatagata 
600
gaattacata gatgtatcag tatcttctta attgccattg tagtaacacg 
650
gcaaaagtct accgttttac gtgtgtgcac acacactaca caatctgtcg 
700
atgctttgtt tgtgatgtga ttatgtgaat atatgatggc gaaacaattc 
750
ttatcaaggg acatgttatc cgtggaattt gttcgacatt tccagcgtaa 
800
ttcgaatact catgctaaat ccagagaaac atttcgcagt tataaatata 
850
attgttggac atcttatgtg tgttgtatat ttcgacctga tcaaatattt 
900
ataaatataa ttgaataatt caaatctttg aacatagaat cgaagatgcc 
950
gttttgacga ctttttcaat gttttttttt aattgttatt ttattcactg 
1000
cgaagatatg attggtgcca ttaatgcata ttatcgtact atagtgtttt 
1050
tgtaattcat tggaaaaaaa aaaaattgct caacttttcc aaagtgagtt 
1100
tttataaatt acttatttaa cgagtccttc atttccacat gattactcgt 
1150
gttttttaca acatgtttgt aaagatgtga attaattgcg aaaaagtaga 
1200
cacaaaaaca ttgtggagcc tatgagacca aacatttagt acccgaaccc 
1250
acatggacta acatgtaaaa tctccctttg caatttatta gaatggtcac 
1300
tttctttaat aatcttgtat atataaaaca cacacacaca caccaacaca 
1350
cttttatata tattcttgta ttcacacata taagaaaaat tgataaatgt 
1400
tttctttaat tatgtgcttt attaaaaaat tgtatgaatt aatgttctcg 
1450
ttgaattttt gtggtggata gatcattgac atatatatgg tgtacttact 
1500
atactgttgt cattctcttg aattataagt gtgaatttca tgtcggatga 
1550
tatcggttag agtaatgaaa tgtttggcta tataacaagc acaacgatgg 
1600
agaaaataat tttcttatat atttagtata tattgagcaa aaagtacttt 
1650
taataagtaa cgtaacgtaa cattgatttc gttaactatg aatataatcc 
1700
gatccatgtc atgcaaacct gtcggaagag aaccattctc acttatattt 
1750
tcttgttggt gagaatatat taaactgtta ttgaattact aatgaaatag 
1800
aatgttgtga taaattaata caccacacaa acgaaatatt ttgagggata 
1850
atgagggatt tcgaaattta tataaccttt cataataata ataatatgtt 
1900
caaacagata attgtattcg actgttacat acttgtcgga tctttattga 
1950
taatgttatt ggacaacaag atatctaaaa ttttgatctt atggacccga 
2000
gggcagcatg taacacgaga catggtggtg acacgtgaca tagtcgatgt 
2050
tttgtgaaca tttatataaa ttaatactca accaataatg gaccaatcga 
2100
acaattaaat taagttatat gagacatgcg attttattca cttcaaaata 
2150
aaaaaattct ttaaataaat tattttaggc aaagtgtaag tgtgcgaaga 
2200
agtttgaaat aaatggtctg aacgaagttt taaagccgat agatacgttt 
2250
cttttaagca tttggtttcc ttttcacgtt ttataaaaga attaattatg 
2300
gatttaccat tttttgaatg atatttatgg attttgtcat tttttaaata 
2350
atttgtggat tttgctcttt ttcagtctaa aaaatgaaat ttagcatagc 
2400
ttttattcgt tatattaagg tttagtcgag tttttttttt gttttttaag 
2450
tttagcattt aatataaaat acttattttt gtaaaaataa tatcgtaaat 
2500
acgtacattt ataagtacta aaatgacaat ttcgtaaaat tttagtaaaa 
2550
atgacttttt caaaagattt tgatgaaaac ggcaaaatca acaataatcc 
2600
ttttatagaa aatatttgtt ttatatctac tatttttaag ttacattgac 
2650
attctataat tttttaaaag ttatcacacg aaatatttta catatgaggt 
2700
gaaactattt atggcttagc agttagaaaa caatgttcca taggagtcaa 
2750
taattaggct tcttcctttc taaaacaaat gtagttagta tggaagatag 
2800
aatttacata attctctcta tgctttttta tacaagtttg gaactatata 
2850
ttttatacaa gtttaaaata tatagtttgg taatatacaa gatttacaga 
2900
taaatataca aactgtacct agatattgtg gaatacaaat ttagagagac 
2950
aatttaggcg ataatactag ttctaatatt agaagaaaaa aaattgaatg 
3000
aaaagtcatg tcatcacatg gtagttgcct ttttgtgaaa ttgcagatga 
3050
agggccacaa tgttagatga acatgaaaca cttatcttga ccttcatcaa 
3100
ccccatcttt gggaactttt cgtttcctcc atttaactat tcaaatctcc 
3150
tccaattatt caaaaaattt agtacccatt tatttatcca ctctatagga 
3200
attatactgt aaaattttca ataactaagc atatgtatat ttgtgatcca 
3250
ttctagtcat aatcattttc tttttttttg gatagttgag gcataaaaag 
3300
ttggggtttt ggtaaaacaa atcctaagag aaatctattt ttgtaatttt 
3350
accctctact tctaaaatat gcagaataat cataaaaaaa caaaaataat 
3400
acgcaatata ttccttatac atatattgta aacgtattca cgatcacata 
3450
cattttaaaa aatctaaatt aaagaagagt tgaactcttt gtctcgaggg 
3500
cttcgatttg atataatact tctcaatttt tttaaaactt gacgaaatct 
3550
gacaatagca aaaaatgtta tattgcgtag tatttttcac tttgtaaaat 
3600
tattctatat tttctgaaag tagaaatgga cgatttcaag acttattttc 
3650
cacaaaatcc taaaaagtta cgaatcttga aacttgtgta tcatttgaac 
3700
tatacacaat aactaactaa ccatgattga aaacgttgtg aaataattca 
3750
atcccgccat taccttcgta taatgattgg taatagtctc gactgatgat 
3800
atgtatatat acggcttgga aatctgtaat aaaaaatgat ttcgaagttt 
3850
tgtggtttaa gggcattcaa tctatcgctt tcttctcccg tgacatcatt 
3900
gtcgaggttt attgctgctc tccgtcgctc tctctctctt gtggtccatt 
3950
ggcctattta aatctctctt atcacattct caatttcttt atatttgaag 
4000
tgtattcaaa accccaaaac acttttctca ttctcttctc tattttcttc 
4050
ttgctctcta gtttttcttt cttcttggtc gtttcctttc agcataaaaa 
4100
ccttataaaa tcataaaagc ttacacctac ttgccacata gacatagccg 
4150
atctcattat atctctattt ctatttctca atagaacttg tttgagctag 
4200
tgtgagagaa gtaaagaaag agagaagaat ccacaactta gttagggtct 
4250
tttcttgcca cattgttgaa cATGTCGAAC AGAAGATCAA GGCAATCTTC 
4300
AAGTGCTCCA AGGATCTCCG ATAATCAAAT GATTGACCTC GTATCTAAGC 
4350
TCCGTCAAAT TTTGCCGGAG ATTGGTCAAC GACGTCGTTC TGATAAGgta 
4400
tcacgcataa tatatgcata tattcattta taacgaccat ttaacattat 
4450
ccatcgtgta aacctatcca aaaaaggaaa gaacaaaagt tttgtaaaaa 
4500
gaagagtgga cactaaaatc aaacaagaaa gaaaaaagaa gtcggaactt 
4550
ttgactccgg acattaagga acatatatac caatattcac aacctttttc 
4600
ttccatattt acataagaga ttacatcaaa atcatcagct tgcatgcatc 
4650
tgcaaacgca taaaagcgca tgcattggtt caaaaaacat atattataat 
4700
gattatgatt ttatttcgtt tttgttgttg aagGCATCAG CCTCGAAAGT 
4750
ATTGCAAGAG ACATGCAATT ACATACGAAA TTTGAACAGA GAAGTTGACA 
4800
ATCTGAGCGA GCGTTTGTCT CAGCTTCTCG AATCTGTCGA TGAAGATAGC 
4850
CCTGAAGCCG CCGTTATTAG AAGCCTACTC ATGTAAtctt ttttgttctt 
4900
ttgtttgttt ttgacaagcc tatccatgta atcttaaatg atcgctctat 
4950
aataattata tttttaacat aatcgtctta ttatgtaaaa ttcaaagaga 
5000
tgggcttgat ctttaatgac atacgaattt catagggtta attccatagt 
5050
caaaagtctc cgacatatat gtgtgtagca gaactgcacg agcattgcct 
5100
tagcaggtgc attattaaaa taaaccagtg ggatgaaatt tggtggagaa 
5150
gaatctttct ttttttctcc ctaacaaaga aaaaaaaaac agagattgtg 
5200
atgtctgaac tcgattgtgt cagtcaagga cagtaaaatt gcgagaggac 
5250
attgttagtt gcgagcattt aattttatac ggaataaaaa aagttatttg 
5300
gcacattgtt tttgaggtaa caaatcatct aaacctcaaa atagagataa 
5350
aaagcaaaaa tagaaataga agacaaaatc aaataaactc ttagccattt 
5400
tggaggggaa aagaaacccc atcttaactg tcacaaaaac gtttatacac 
5450
atctaaagga aagttttgcc ttttaggacg tccacacaaa gaaattaaat 
5500
aaaaatcaac gttatagttt tatttgatat ctcataattc tacatgcatg 
5550
tagtttaaag tttaaacaca cgtatacgca tattgatata catgcaccca 
5600
tgtacataca tttagacaag tttggtcctt tcaaggcgta ggagactggt 
5650
caaatctatc actcctaatt ttaagccata tagctatacc ggtttggtcc 
5700
tttcagggtt taggagactg gtcaaatccg actcctaatt ttaagccata 
5750
tagctataaa aataatcaca agaagaatta catgaaaaag gagagcattc 
5800
agagactagc tttgttacac tcttccacct aaaacgatct taattttttt 
5850
ttcttgttac atagatacaa ttttcaggtc ttgtaccctt tttgaattat 
5900
tattgtaaaa ttttgagata tactaaatag aataattaaa tagcggaaac 
5950
gatttaaaca atagagcaat aacgaaacga cacaatattt aacaaggtat 
6000
cggttggttc tctttcaaac caaccactag tcctcggctg caacaaaagt 
6050
ttattagatc acttcaagaa gtaaaagata tacttagaat ttctacagta 
6100
aattcaaata catctgtatc taagaacatg aactaaggtt aacaagtaaa 
6150
ctcattttac ttccctttaa tcatgtatga attcttcttg gagaagtctt 
6200
tccaaggtga tctctcccca aactccacag cgacacaagt ttcacacaaa 
6250
cttatcaaac actctgtttt ctatttctct gttttaacag caatcttttg 
6300
tatcttgaaa attggagatg atgcttgcaa cacgttgtcc ttatccacca 
6350
caaaagcaga gtatatatat gaatatgact cttacagaga gcatcaagga 
6400
aacaatttgg ataaaaagat tgctataata attggttctt tgcaatcaaa 
6450
atatgaagtg aactgtgaca gtccaagagc tatatatgtt tgtctaaaaa 
6500
tatgaaacgg gaacatatag aagttgagct acacttca
6550